LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi10g0644	ATGCCCACTTGTAGTAAAGGAAGCCCCATAAGTTCTCGAGGTGTGTGGCAGATGGTGAAGGTCCCAGGAATGGAGGTTTGGGGCCTAATACTTGTGGTGATGGTCTCTGTGTTTGTTGGGAATGGAGAAGCTCAGGCAAAGTCTTTGTTGATAAACTGTGGCACAAATTCCAGTGTTAATGTGGATGGTAGGAGGTGGGTGGGTGACTTGGCTCCTGACAACAATCTTACCCTAAGTTCTCTGGGTGTTGCTGCCTCCACAGACACATTTAGCGGGGATACAACCTTTGCTCAGCTCTATGAAACTGCCCGGATTTTCCCAGATAGTTTGAATTACACAGCTAGCCTAAACCAGGGAAACTATTCTGTTAGGCTCCATTTCTATCCATTCTCCTTTGAGAAGTACAACACAAACGAATCTTCATTCAGTGTGACGGCAAATGGTCTTAAGTTGGCATCCCAATTGAATGTTCCTGGTGAGATTTCGCACAAGAATTCATATTTGCAGAGTTCAGGAAGTAATTCAAGTTCATTCTCTATGATTAAGGAATATTTCCTGACTGTTGATTCGGGTCTGCTTGTGATTGAGTTTGCCCCAACTAAAGGATCATTTGGGTTTATAAATGCCATAGAAATTGTCCCAGTTGTAGATAATCTCTTCTTCAGCTCTGTCAGTAAAGTGGGTGGAACAAATAGTGTTCTGAATTTGAGCGGTCGGGGTATTGAGGCTATGTATAGATTGAATGTTGGGGGTCCTGAGATTACACCAGATCAGGATTTGGATCTATGGAGGACATGGGATGTGGATTCCAGTTACATGTTCACAGCAAATGCCGGGTCAGAAGTTCATAATAGTTCCAATATTACCTATGCTTCCATGAATGATTCAGTGGTTGCCCCTCTTGCAGTGTATGAAACAGCAAGATCTATGTCTAACACTGAAGTCCTGGAGAAAAGGTTCAACATGTCATGGAAATTTGAAGTGGATCCCGATTTTGAATATTTAATTCGATTACATTTCTGTGAGCTGTTTTATGAAAGGGCAAACCAGAGGAGCTTCAGAATCTACATTAACAACAGGACTGCAGCAGATAATTTTGATGTTTTTTTGCGAGCAGGAGGGATGAACAAGGCATATCATCAGGACTTTTTGGATATGGTGTCCTCAAAAATCAACACCCTTTGGATCCAGCTGGGTCCTGATACAACGGTAGGTGCCTCAGGAACTGATGCTATCTTGAACGGGCTGGAGATTTTCAAGCTTAGCCGTAATGGGAATCTTGCCTATGTAGAGAGGTTTGACTCAACCAAGAGTTCAGCAGGCAGCAAAACTTCAAAAACTCAAACTCTTTGGGTGGGACTTGGAGCCGGTGTGGCTTCCATTGCTATGATGGCTGTCATATTTAGTCTCATCTTCTATTTCTGCAAAAGATGGAGAAAGAAATCAAGTGCCACCAAGAACAAATCCCCAGGTTGGCGGCCACTATTCCTTCATGTAAATAGCACCAATGCCAAGGGAATGAGTCAAAGTCTAAGTGTATCTTTGGCCTCTAATAGAGCTGGCAAGCGCTTTACATTAACAGAGATTCGGGCAGCAACAAATAATTTTGATGAAAGTTTAGTGATTGGAGTAGGAGGCTTCGGTAAAGTCTATAAAGGGGAGATTGATGATGGCACTCCTGCAGCAATTAAGCGAGCCAACCCACAATCTGAGCAAGGACTGGCTGAATTTCAAACTGAGATCGAGATGCTTTCAAAGCTCAGGCACAGGCATTTGGTGTCCATGATTGGATTCTGTGAAGAGCAGAATGAGATGATCTTGGTTTATGAGTATATGGCAAATGGGACCCTTAGAAGCCATCTCTTCGGGAGTGAACTCCCACCTTTAACTTGGAAGCAACGATTAGAAGCATGCATTGGGGCTGCTCGAGGGCTCCATTACCTTCATACAGGAGCAGAAAGGGGAATCATCCACAGGGATGTTAAGACTACCAACATACTGATAGATGAAAACTTTGTTGCCAAAATGGCTGATTTTGGATTGTCCAAAACTGGTCCTGCTTGGGAACATACTCATGTTAGCACTGCAGTTAAAGGAAGCTTTGGGTATCTCGACCCAGAATATTTCCGACGACAGCAGTTAACGGAGAAATCTGATGTTTACTCCTTTGGTGTGGTGTTGTTTGAAGTTGTTTGTGCACGGGCCGTCATAAATCCAAGTTTGCCAAGAGACCAGATCAATCTTGCGGAATGGGCTATGCATTGGCAACATCAGAGGTCACTTGAAACCATCATTGACCCACATCTCAAAGGAAATTATTCTCCAGATTCGTTGAGAAAATTTGGGGAGATAGCAGAAAAATGTCTTGCTGATGAGGGAAAGAACCGGCCCACAATGGGGGAAGTTCTATGGCACTTGGAGTATGTCTTGCAACTTCATGAAGCTTGGCTGCGCACCAATGTTGGAGAAAACTCGTTTTCAAGCAGTCAGGCTTTAGGAAACCTTGAAGAGGGACTGGAATCTGCACATCTAGATGAAGAGAATGAAATAAGCCTGAAAATGAAGCAAAAGAGAGAATCTGCAACAAGGGGAATCAATGCATAG	2604	0.4355	MPTCSKGSPISSRGVWQMVKVPGMEVWGLILVVMVSVFVGNGEAQAKSLLINCGTNSSVNVDGRRWVGDLAPDNNLTLSSLGVAASTDTFSGDTTFAQLYETARIFPDSLNYTASLNQGNYSVRLHFYPFSFEKYNTNESSFSVTANGLKLASQLNVPGEISHKNSYLQSSGSNSSSFSMIKEYFLTVDSGLLVIEFAPTKGSFGFINAIEIVPVVDNLFFSSVSKVGGTNSVLNLSGRGIEAMYRLNVGGPEITPDQDLDLWRTWDVDSSYMFTANAGSEVHNSSNITYASMNDSVVAPLAVYETARSMSNTEVLEKRFNMSWKFEVDPDFEYLIRLHFCELFYERANQRSFRIYINNRTAADNFDVFLRAGGMNKAYHQDFLDMVSSKINTLWIQLGPDTTVGASGTDAILNGLEIFKLSRNGNLAYVERFDSTKSSAGSKTSKTQTLWVGLGAGVASIAMMAVIFSLIFYFCKRWRKKSSATKNKSPGWRPLFLHVNSTNAKGMSQSLSVSLASNRAGKRFTLTEIRAATNNFDESLVIGVGGFGKVYKGEIDDGTPAAIKRANPQSEQGLAEFQTEIEMLSKLRHRHLVSMIGFCEEQNEMILVYEYMANGTLRSHLFGSELPPLTWKQRLEACIGAARGLHYLHTGAERGIIHRDVKTTNILIDENFVAKMADFGLSKTGPAWEHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVVCARAVINPSLPRDQINLAEWAMHWQHQRSLETIIDPHLKGNYSPDSLRKFGEIAEKCLADEGKNRPTMGEVLWHLEYVLQLHEAWLRTNVGENSFSSSQALGNLEEGLESAHLDEENEISLKMKQKRESATRGINA*	868

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi10g0644	867	Gene3D	Transferase(Phosphotransferase) domain 1	612	826	-	-
	Vvi10g0644	867	Pfam	Protein tyrosine and serine/threonine kinase	541	803	IPR001245	GO:0004672\|GO:0006468
	Vvi10g0644	867	FunFam	receptor-like protein kinase FERONIA	499	611	-	-
	Vvi10g0644	867	Gene3D	Phosphorylase Kinase; domain 1	498	611	-	-
	Vvi10g0644	867	ProSitePatterns	Protein kinases ATP-binding region signature.	542	564	IPR017441	GO:0005524
	Vvi10g0644	867	MobiDBLite	consensus disorder prediction	846	860	-	-
	Vvi10g0644	867	FunFam	Putative receptor-like protein kinase	48	215	-	-
	Vvi10g0644	867	Gene3D	-	47	215	-	-
	Vvi10g0644	867	Gene3D	-	241	423	-	-
	Vvi10g0644	867	MobiDBLite	consensus disorder prediction	846	867	-	-
	Vvi10g0644	867	SMART	serkin_6	536	809	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi10g0644	867	Pfam	Malectin-like domain	51	420	IPR024788	-
	Vvi10g0644	867	SUPERFAMILY	Protein kinase-like (PK-like)	514	808	IPR011009	-
	Vvi10g0644	867	FunFam	Receptor-like protein kinase FERONIA	612	827	-	-
	Vvi10g0644	867	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	656	668	IPR008271	GO:0004672\|GO:0006468
	Vvi10g0644	867	ProSiteProfiles	Protein kinase domain profile.	536	808	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi10g0644	867	PANTHER	OS07G0166700 PROTEIN	522	813	IPR045272	GO:0004714\|GO:0006468
	Vvi10g0644	867	CDD	STKc_IRAK	542	807	-	-
	Vvi10g0644	867	FunFam	Receptor-like protein kinase FERONIA	240	423	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi10g0644	Vvi-Chr10	8904185	8907026	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi10g0644	29	841	Receptor kinase-like Gene Family	AT1G30570	67.075	0.0	1141

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vvi10g0644		Malectin_like	3.9e-35	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi10g0644	-		-	vri:117924042	1696.79