LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi10g0636	ATGAGTGACCGTCCATATGAACTCGGGAGGCCTGCCTCAGGTAAAAGAAGGTTAAAAGATTTATTGCTTAAAAGTGATAATCGCACTTGTGCTGATTGTGGTGCTCCAGATCCCAAATGGGCGTCTGCAAATATTGGAGTCTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGGTGTTGTCTGTGGCATTGGATGATTGGTCTGATGATGAAATTGATGCCATGGTTGAGGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTTTATTCCTGAAGGAGTCACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAGGTCAAAATATGAGCTTCAAGAATTTTTGAAACCTAGCTTGCGGATTGCTTCAGTTTCTTCTGGAAAGAGCTCTCTCCAATCATCTTTTTCTAGAAAGTTGATGGATAATTTTCGAAGTTCAAACTCACAGAAATTGGAAGGCATGGTAGAGTATATTGGATTGTTGAAAGTCAAAGTGATAAGAGGCAAGAATTTAGCAGTCAGAGACATGCTATCAAGTGATCCCTATGTTGTCCTGACACTTGGCCCACAGACTGTCCAGACACAGGTAATAACGAGCAACTTGAATCCAGTCTGGAATGAGGAACTCATGCTTTCTGTGCCCATGGATTATGGGCCCATAAAAGTGAAAGTCTTTGACCATGACACGTTCTCTGCTGATGACATAATGGGAGAAGCCGAGATTGACATCCAACCCCTGATAACATCCGCCATGGCATTTGGAAATGCAGAAATGTTTGGAGACATGCAGATAGGAAAATGGCTGAAATCACACGACAACGCCCTCTTAGAAGACAGCATCATAAACATTATTGGTGGGAAGGTGAAACAGGAGGTGCAACTGAAGCTCCAGAATGTTGAATCTGGAGAACTAGATCTAGAAATAGAGTGGCTGCCTCTTGACCAATAG	993	0.422	MSDRPYELGRPASGKRRLKDLLLKSDNRTCADCGAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVALDDWSDDEIDAMVEVGGNSSANSIYEAFIPEGVTKPKPNSSHEERMRFIRSKYELQEFLKPSLRIASVSSGKSSLQSSFSRKLMDNFRSSNSQKLEGMVEYIGLLKVKVIRGKNLAVRDMLSSDPYVVLTLGPQTVQTQVITSNLNPVWNEELMLSVPMDYGPIKVKVFDHDTFSADDIMGEAEIDIQPLITSAMAFGNAEMFGDMQIGKWLKSHDNALLEDSIINIIGGKVKQEVQLKLQNVESGELDLEIEWLPLDQ*	331

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi10g0636	330	SMART	C2_3c	175	270	IPR000008	-
	Vvi10g0636	330	Gene3D	Arf GTPase activating protein	6	136	IPR038508	-
	Vvi10g0636	330	PRINTS	HIV Rev interacting protein signature	46	63	IPR001164	GO:0005096
	Vvi10g0636	330	PRINTS	HIV Rev interacting protein signature	67	88	IPR001164	GO:0005096
	Vvi10g0636	330	PRINTS	HIV Rev interacting protein signature	27	46	IPR001164	GO:0005096
	Vvi10g0636	330	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	171	268	IPR035892	-
	Vvi10g0636	330	CDD	C2_ArfGAP	173	317	-	-
	Vvi10g0636	330	CDD	ArfGap	18	124	-	-
	Vvi10g0636	330	SUPERFAMILY	ArfGap/RecO-like zinc finger	15	132	IPR037278	-
	Vvi10g0636	330	Pfam	Putative GTPase activating protein for Arf	16	131	IPR001164	GO:0005096
	Vvi10g0636	330	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	172	330	-	-
	Vvi10g0636	330	Gene3D	C2 domain	171	330	IPR035892	-
	Vvi10g0636	330	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	8	330	IPR044518	GO:0005096\|GO:0005543
	Vvi10g0636	330	Pfam	C2 domain	174	265	IPR000008	-
	Vvi10g0636	330	FunFam	Arf-GAP with dual PH domain-containing protein 1	10	138	-	-
	Vvi10g0636	330	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	15	129	IPR001164	GO:0005096
	Vvi10g0636	330	SMART	arf_gap_3	16	137	IPR001164	GO:0005096
	Vvi10g0636	330	ProSiteProfiles	C2 domain profile.	162	271	IPR000008	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi10g0636	Vvi-Chr10	8791523	8800252	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi10g0636	8	330	C2H2 Transcription Factor Family	AT4G21160	76.364	0.0	533

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi10g0636	K12486		-	vvi:100268078	640.573