Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0633 ATGTGGACCCCTCGTTTTGGGTCAACAGGAGACATCTTTTTGGTTGGTTTGGAGGCTTGTAGACTTTTGCAATATTTTTGCCACCTTTCAGAGGGAGACACGTGGACAGGAGGAGGCTTGGACGGCAAGAAAGGAAGCAAGGACAAGGAGAGCAAGAAAAGGAAAGAGCAGAGGAAAGGGAGAGCCCAAGGAAGGGAAGCCGAGCAAGCTTTGCTTGAAAAAACAAAAACAAAAAAACAAACTTGTCATCCTTCCATTACTTTTCACTCTGCTATTAGCTTCAGTGACAGCTTCAGATCCTACTGTGGAAAAGTTTGCCACAATGTGTCTCTCTCAATTCCGAGATTCTTATCCCAGTACCCACTGCCTTTTACACCCCAAACACCACTTCTTTCAGTGCTATTTTGCAGTCTTCTGCCCATAACCTCAGTTGATGAGTTTGCTCTTATTGCCTTAAAATCCCATATCACATATGATTCCCAGGGCATTTTGGCAACAAATTGGTCTACCAAAAGCTCCTACTGCAATTGGTATGGTATTTCTTGCAATGCTCCTCAACAAAGAGTTTCTGTAATCAACCTCTCTAGCATGGGTCTTGAAGGAACTATTGCACCACAAGTGGGCAACCTCTCCTTTCTTGTTTCCCTTGATCTTAGTAATAACTACTTCCATGACTCTCTTCCCAAGGATATTGGTAAGTGCAAGGAGCTTCAACAGCTGAATTTATTTAATAATAAATTGGTTGGAGGCATTCCAGAAGCCATTTGTAATTTATCAAAACTTGAAGAGCTATATCTTGGCAATAATCAGTTGATTGGTGAAATTCCAAAGAAAATGAATCATCTTCAGAATCTGAAGGTATTGTCATTCCCAATGAACAACTTAACAGGTTCCATACCGGCCACCATTTTCAATATATCTTCTTTGCTCAATATTAGTCTCTCCAATAATAACCTCTCTGGGAGTCTTCCCAAGGATATGCGCTACGCCAATCCAAAGCTCAAGGAGCTTAATCTTTCATCAAATCATTTGAGTGGAAAGATCCCCACTGGTTTAGGCCAATGTATACAGCTTCAAGTAATTTCCTTAGCATATAATGATTTCACGGGAAGCATACCAAGTGGAATCGGTAACTTGGTGGAGCTTCAAAGATTGTCTCTACTGAATAACAGCTTGACAGGCATTCCACAAGCCATAGGGAGTTTATCCAACCTTGAAGGATTATATCTTCCTTATAACAAATTGACAGGTGGAATTCCTAAAGAGATTGGGAATCTTTCAAATTTAAATCTTTTGCACTTAGCGTCTAATGGAATTAGTGGCCCTATTCCTGTCGAAATTTTCAATATCTCTTCATTGCAAGGGATTGATTTCAGTAATAATAGCCTTTCTGGGAGTCTTCCAAGGGATATTTGTAAACATCTTCCTAATCTCCAATGGCTATATCTTGCTCGGAATCATCTCAGTGGTCAACTTCCTACAACTTTATCCTTATGTGGAGAGCTCTTGCTCCTGTCACTATCATTCAATAAATTCAGAGGAAGCATACCAAGAGAAATTGGCAACTTATCAAAGCTTGAAGAGATCTATCTATATCACAATAGCCTCGTAGGTTCCATTCCAACTTCATTTGGTAATTTGAAGGCCTTAAAACATCTTCAGTTGGGAACAAACAATCTTACGGGGACGATACCAGAAGCTCTTTTTAACATCTCTAAACTACATAACCTTGCGTTGGTGCAAAATCACCTTTCAGGCACCTCTGGGGTTAGTTTTCTTACTTCTTTGACAAATTGCAAATTTTTGAGAACATTGTGGATAGGTTATAATCCTTTGAAAGGTACTCTTCCAAATTCACTAGGGAATCTTCCCATTGCTCTTGAAACTAATGACTTGACAGGGTCAATTCCAACTACATTGGGACAGCTACAAAAGCTTCAGGCGTTGTCCATTGCTGGAAATAGAATACGAGGATCCATTCCAAATGATCTGTGCCATTTGAAGAACTTGGGATACTTGGGTTTGAGTTCTAACAAATTGTCTGGATCAACCCCAAGTTACATTCCAAGCAGGATGGGAAAACTACAAAATTTGATTACACTCTCCTTGTCCCAAAACAAACTACAAGGCCCAATACCTGTAGAATGTGGTGATTTGGTAAGCTTGGAATCATTGGATCTATCCCAAAACAATTTATCTAGAATCATTCCCAAGTCATTAGAGGCCCTTATTTATCTCAAGTATCTAAATGTTTCTTTCAATAAACTACAAGGAGAAATTCCGAATGGAGGACCTTTCGTAAATTTCAATGCTGAATCGTTCATGTTCAATGAAGCCTTATGTGGAGCACCTCATTTTCAAGTCATGGCATGTGATAAAAACAACCGCACTCAATCATGGAAGACAAAGTCATTCATCTTGAAATATATTCTATTACCAGTCGGATCAACAGTAACTTTAGTGATTTCACACCAGCAGCTTCTTTATGCAACAAATGACTTTGGTGAAGACAATTTGATTGGGAAAGGAAGCCAGGGCATGGTATATAAAGGGGTATTATCTAATGGCTTAATTGTTGCTATAAAGGTTTTCAATTTAGAATTCCAAAGAGCCTTGAGGAGTTTCGATTCAGAATGTGAAGTGATGCAAGGGATTCGCCACCGAAATCTTGTTAGGATAATTACCTGTTGCTCAAACCTCGATTTCAAAGCATTGGTACTCGAATATATGCCTAATGGAAGTCTTGAGAAGTGGTTGTATTCCCACAACTATTTTTTGGATCTCATCCAAAGATTAAACATTATGATATATGTAGCATCAGCATTAGAGTACCTTCATCATGATTGTTCGAGCCTTGTGGTGCATTGCGACTTGAAGCCCAGTAATGTTTTGTTAGATGACAATATGGTTGCACATGTGGCGGATTTTGGGATTGCAAAACTCTTGACTGAAACAGAGTCTATGCAGCAAACAAAGACCTTAGGCACAATAGGCTATATGGCACCAGAGCATGGCTCAGCTGGGATAGTATCCACAAAGAGCGATGTTTATAGCTATGAGATCTTGTTGATGGAAGTATTTGCAAGGAAGAAGCCTATGGATGAAATGTTCACTGGGGATCTAACCTTGAAGACTTGGGTAGATTGTTTGTCCTCCATTATGGCTTTAGCTCTGGCATGTACAACCGATTCACCTAAGGAGCGGATCGACATGAAAGATGTGGTAGTTGAACTCAAGAAGAGCAGAATCAAACTGTTGATTGGCCCTATTCCTGCCGAGATTTCCAATATCTCTTCATTGCAAGGGATTGATTTCACTAATAATAGCCTTTCTGGGAGTCTTCCAATGGAAATTGGCAACTTATCAAAGCTTGAAGAGATCTCTCTATATGGCAATAGCCTCATAGGCTCCATTCCAACTTCATTTGGTAATTTCAAGGCCTTAAAATTTCTTAATTTGGGGATAAACAATCTTACGGGGATGGTACCAGAAGCTAGTTTTAACATCTCTAAACTACAGGCCCTTGCGTTGGTGCAAAATCACCTTTCAGGCAGTCTCCCATCAAGTATTGGCACTTGGCTCCCGGATCTTGAATGGCTTTCTATAGGAGCTAATGAATTCAGTGGAATAATTCCATTTTCTATTTCAAATATGTCCAAACTTATCCAACTACATGTAGCGTGCAACTCCTTCAGTGGTAATGTGCCAAAAGATCTCGGTACTCTTCCAAATTCACTAGGGAATTTTTCTATTGCTCTTGAAATATTTGTTGCATCAGCCTGCCAATTGAGAGGATCCATTCCCACAGGAATTGGTAATTTGACCAATTTGATAGAGCTGGACCTGGGAGCTAATGACTTGATAGGGTTGATTCCAACTACATTGGGACGGCTACAGAAGCTCCAACTGTTGCACATTGCTAGAAATAGAATACGAGGATCCATTCCAAATGATCTTTTCCATTTGAAGAACTTGGGATACTTGCATTTGAGTTCTAACAAATTGTTTGGATCAATCCCAAGTTGTTTTGGAGATCTTCCTACGCTACAAGCACTCTCTTTTGACTCCAATGCGTTAGCTTTCAACATTCCTTCATCCTTGTGGAGCCTTAAAGATCTGTTGTTTCTTAACTTGTCTTCAAATTTCCTGACTGGTAATCTACCACCCAAAGTTGGAAACATGAAGTCCATTACAGCATTGGCCCTATCAAAGAACCTAGTTTCAGAAATTCCGGATGGAGGACCTTTTGTAAATTTCACTGCTAAATCGTTCATCTTCAATGAAGCCTTGTGTGGAGCACCTCATTTTCAAGTCATAGCATGTGATAAAAACACTCCCAGTCAATCATGGAAGACAAAGTCATTCATCTTGAAATATATTCTACTACCAGTCGCATCAACAGTAACTTTAGTGGCTTTCATTAATCTTGTCAGGATAATTACGTGTTGCTCAAACCTCAATTTCAAAGCGTTGGTGCTTGAATATATGCCTAATGGAAGTCTTGACAAGTGGTTGTATTCCCACAACTATTTTTTGGATCTCATCCAAAGATTAAACATTATGATAGATGTAGCATCGGCATTGGAGTATCTTCATCATGATTGTTCGAGCCTTGTGGTGCATTGCGACTTGAAGCCCAATAATGTTTTGTTAGATGACAACATGGTTGCTCATGTGGCCGATTTTGGGATCGCAAGACTCTTGACTGAAACAAAGTCTATGCAGCAAACAAAGACCTTGGGCACAATAGGCTATATGGCACCAGCAGAGTATGGCTCAGATGGGATAGTATCAATTAAGGGCGATGTTTATAGCTATGGGATCTTGCTGATGGAAGTATTTGCAAGAAAGAAACCTATGGATGAAATGTTCACTGGGGATCTAACCTTAAAGACGTGGGTGGAGTCATTTTTGAGTTGTTTGTCCTCCATTATGGCTTTAGCTTTGGCATGTACAATTGATTCACCTGAAGAGAGGATCCACATGAAAGATGTGGTAGTTGAACTCAAGAAGATCAGAATCAACCTGTTGATTTATGAAAAATATGTGCAATCCTTATAA 5061 0.3968 MWTPRFGSTGDIFLVGLEACRLLQYFCHLSEGDTWTGGGLDGKKGSKDKESKKRKEQRKGRAQGREAEQALLEKTKTKKQTCHPSITFHSAISFSDSFRSYCGKVCHNVSLSIPRFLSQYPLPFTPQTPLLSVLFCSLLPITSVDEFALIALKSHITYDSQGILATNWSTKSSYCNWYGISCNAPQQRVSVINLSSMGLEGTIAPQVGNLSFLVSLDLSNNYFHDSLPKDIGKCKELQQLNLFNNKLVGGIPEAICNLSKLEELYLGNNQLIGEIPKKMNHLQNLKVLSFPMNNLTGSIPATIFNISSLLNISLSNNNLSGSLPKDMRYANPKLKELNLSSNHLSGKIPTGLGQCIQLQVISLAYNDFTGSIPSGIGNLVELQRLSLLNNSLTGIPQAIGSLSNLEGLYLPYNKLTGGIPKEIGNLSNLNLLHLASNGISGPIPVEIFNISSLQGIDFSNNSLSGSLPRDICKHLPNLQWLYLARNHLSGQLPTTLSLCGELLLLSLSFNKFRGSIPREIGNLSKLEEIYLYHNSLVGSIPTSFGNLKALKHLQLGTNNLTGTIPEALFNISKLHNLALVQNHLSGTSGVSFLTSLTNCKFLRTLWIGYNPLKGTLPNSLGNLPIALETNDLTGSIPTTLGQLQKLQALSIAGNRIRGSIPNDLCHLKNLGYLGLSSNKLSGSTPSYIPSRMGKLQNLITLSLSQNKLQGPIPVECGDLVSLESLDLSQNNLSRIIPKSLEALIYLKYLNVSFNKLQGEIPNGGPFVNFNAESFMFNEALCGAPHFQVMACDKNNRTQSWKTKSFILKYILLPVGSTVTLVISHQQLLYATNDFGEDNLIGKGSQGMVYKGVLSNGLIVAIKVFNLEFQRALRSFDSECEVMQGIRHRNLVRIITCCSNLDFKALVLEYMPNGSLEKWLYSHNYFLDLIQRLNIMIYVASALEYLHHDCSSLVVHCDLKPSNVLLDDNMVAHVADFGIAKLLTETESMQQTKTLGTIGYMAPEHGSAGIVSTKSDVYSYEILLMEVFARKKPMDEMFTGDLTLKTWVDCLSSIMALALACTTDSPKERIDMKDVVVELKKSRIKLLIGPIPAEISNISSLQGIDFTNNSLSGSLPMEIGNLSKLEEISLYGNSLIGSIPTSFGNFKALKFLNLGINNLTGMVPEASFNISKLQALALVQNHLSGSLPSSIGTWLPDLEWLSIGANEFSGIIPFSISNMSKLIQLHVACNSFSGNVPKDLGTLPNSLGNFSIALEIFVASACQLRGSIPTGIGNLTNLIELDLGANDLIGLIPTTLGRLQKLQLLHIARNRIRGSIPNDLFHLKNLGYLHLSSNKLFGSIPSCFGDLPTLQALSFDSNALAFNIPSSLWSLKDLLFLNLSSNFLTGNLPPKVGNMKSITALALSKNLVSEIPDGGPFVNFTAKSFIFNEALCGAPHFQVIACDKNTPSQSWKTKSFILKYILLPVASTVTLVAFINLVRIITCCSNLNFKALVLEYMPNGSLDKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCSSLVVHCDLKPNNVLLDDNMVAHVADFGIARLLTETKSMQQTKTLGTIGYMAPAEYGSDGIVSIKGDVYSYGILLMEVFARKKPMDEMFTGDLTLKTWVESFLSCLSSIMALALACTIDSPEERIHMKDVVVELKKIRINLLIYEKYVQSL* 1687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0633 1686 FunFam Serine-threonine protein kinase plant-type 816 909 - -
Vvi10g0633 1686 SMART LRR_typ_2 475 499 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 719 742 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 1274 1297 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 523 546 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 1370 1394 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 210 234 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 426 450 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 1121 1144 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 1298 1322 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 258 282 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 1145 1168 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 547 571 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 332 355 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 667 695 IPR003591 -
Vvi10g0633 1686 SMART LRR_typ_2 379 402 IPR003591 -
Vvi10g0633 1686 SUPERFAMILY RNI-like 419 762 - -
Vvi10g0633 1686 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 297 394 - -
Vvi10g0633 1686 Pfam Protein tyrosine and serine/threonine kinase 1471 1669 IPR001245 GO:0004672|GO:0006468
Vvi10g0633 1686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1539 1551 IPR008271 GO:0004672|GO:0006468
Vvi10g0633 1686 Pfam Leucine rich repeat 213 271 IPR001611 GO:0005515
Vvi10g0633 1686 Pfam Leucine rich repeat 1276 1335 IPR001611 GO:0005515
Vvi10g0633 1686 Pfam Leucine rich repeat 381 439 IPR001611 GO:0005515
Vvi10g0633 1686 Pfam Leucine rich repeat 525 584 IPR001611 GO:0005515
Vvi10g0633 1686 Gene3D Ribonuclease Inhibitor 1081 1239 IPR032675 -
Vvi10g0633 1686 Gene3D Ribonuclease Inhibitor 330 591 IPR032675 -
Vvi10g0633 1686 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 395 592 - -
Vvi10g0633 1686 SMART serkin_6 1425 1678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0633 1686 SMART serkin_6 834 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0633 1686 ProSiteProfiles Protein kinase domain profile. 834 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0633 1686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 953 965 IPR008271 GO:0004672|GO:0006468
Vvi10g0633 1686 FunFam Leucine-rich repeat receptor protein kinase EMS1 1073 1165 - -
Vvi10g0633 1686 MobiDBLite consensus disorder prediction 42 66 - -
Vvi10g0633 1686 Pfam Leucine Rich Repeat 721 743 IPR001611 GO:0005515
Vvi10g0633 1686 Pfam Leucine Rich Repeat 333 352 IPR001611 GO:0005515
Vvi10g0633 1686 ProSiteProfiles Leucine-rich repeat profile. 721 742 IPR001611 GO:0005515
Vvi10g0633 1686 Gene3D Ribonuclease Inhibitor 592 799 IPR032675 -
Vvi10g0633 1686 Gene3D Ribonuclease Inhibitor 1240 1449 IPR032675 -
Vvi10g0633 1686 SUPERFAMILY Protein kinase-like (PK-like) 1474 1669 IPR011009 -
Vvi10g0633 1686 SUPERFAMILY L domain-like 162 496 - -
Vvi10g0633 1686 Pfam Leucine rich repeat N-terminal domain 145 183 IPR013210 -
Vvi10g0633 1686 MobiDBLite consensus disorder prediction 38 66 - -
Vvi10g0633 1686 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 395 1078 - -
Vvi10g0633 1686 Pfam Protein kinase domain 837 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0633 1686 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 594 795 - -
Vvi10g0633 1686 Gene3D Ribonuclease Inhibitor 258 329 IPR032675 -
Vvi10g0633 1686 Gene3D Ribonuclease Inhibitor 145 257 IPR032675 -
Vvi10g0633 1686 Gene3D Transferase(Phosphotransferase) domain 1 1496 1680 - -
Vvi10g0633 1686 Gene3D Transferase(Phosphotransferase) domain 1 910 1080 - -
Vvi10g0633 1686 Gene3D Phosphorylase Kinase; domain 1 800 909 - -
Vvi10g0633 1686 SMART LRR_sd22_2 258 277 - -
Vvi10g0633 1686 SMART LRR_sd22_2 402 428 - -
Vvi10g0633 1686 SMART LRR_sd22_2 719 740 - -
Vvi10g0633 1686 SMART LRR_sd22_2 1322 1348 - -
Vvi10g0633 1686 SMART LRR_sd22_2 523 549 - -
Vvi10g0633 1686 SMART LRR_sd22_2 282 308 - -
Vvi10g0633 1686 SMART LRR_sd22_2 1121 1147 - -
Vvi10g0633 1686 SMART LRR_sd22_2 643 665 - -
Vvi10g0633 1686 SMART LRR_sd22_2 695 716 - -
Vvi10g0633 1686 ProSiteProfiles Protein kinase domain profile. 1404 1678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0633 1686 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 910 1049 - -
Vvi10g0633 1686 SUPERFAMILY RNI-like 1089 1412 - -
Vvi10g0633 1686 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1239 1411 - -
Vvi10g0633 1686 FunFam Nuclear pore complex protein NUP107 142 296 - -
Vvi10g0633 1686 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1496 1648 - -
Vvi10g0633 1686 SUPERFAMILY Protein kinase-like (PK-like) 812 1078 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0633 Vvi-Chr10 8695760 8717864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0633 1465 1673 Receptor kinase-like Gene Family AT5G46330 32.231 7.58e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi10g0633 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0633 - K13420 vvi:100256042 970.689