Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0632 ATGCATTATGAATTGCCTACATTTGTCTCAAATCATTTGAGTGGAAAGATTCCCACGAGTTTAGGCCAATGTATAAAGCTTCAAGTAATTCTCTTATCACTTAATGATTTCATGGGAAGCATACCGACTTTCAAAGATATAAGAAAAGCGTTAATTGTTTGTGAAATCCCCTCCAATTTGTCACATTGCAGAGAGCTTCGAGTGCTATCATTATCATTTAATCAACTCACTAGAGGCATTCCACAAGCCATAGGGAGTTTATGTAATCTTGAAGAATTATATCTTGCTTTTAACAAATTGACAGGTGGAATTCCTAGAGAGATTGGGAATCTTTCAAATTTAAATATTTTGTATCCATTTTCAAAGAACCTAGTTTCAGGTTACATTCCAAGAAGGATGGGAAAACTACAAAATTTGGCTAAACTCTCCTTGTCCCAAAATAGACTACAAAGCCCAATACCTGTAGAATTTGGTGATTTGAAGACAAAGTCATTCATTAAGAAATATATTCTACTAACAATCGCATCAACAGTAACTTTAGTGGCTTTCATTGTTTTGTGGATACGTAGACGAGATAACATGGAAATACCTGCTCCAATCGATTCATGGCTTCCTGGAACACATGGAAAGATTTCATACCAGCAGCTTCTTTATGCAACAAACGACTTTGGTGGAGACAATTTGATTGGAAAAGGAAGCCTGGGCATGATATATAAAGGGGTATTATCTAATGGCTTGAATGTTGCTATAAAGGTTTTCAATTTAGAATTCCAAGGAGCCTTGAGGAGTTTCAATTCAGAATGTGAAGTGATGCAAAGGATTCGCCATCAGAATCTTGTTAAGATAATTAATTGTTGCTCAAACCTCGATTTCAAAGCGTTGGTTCTCAAATATATGCCTAATGGAAGTCTTGATAAGGGGTTGTATTCTCACAACCATTTTTTGGATCTCATCCAAAGATTAAACATTATGATAGATGTTGCATCGGCATTAGAGTATCTTCATCTTGATTGTTCAAGCCTTGTGGTGCATTGCGACTTGAAGCCCAATAATGTTTTGTTAGATGACGACATGGTTGCTCATGTGGCCGATTTTAGGATCACAAGACTCTTGATTGAAACAAAGCCTATGCAACAAACGAAGACCTTGGGCACCATAGGCTATATGGCACCAGAGTATGGCTTAGATGGGATAGTATCCATAAAGGTTGATGTTTATAGCTATGGGATCTTCTTGATGGAAGTATTTGCAAGGAAGAAGCCTATGGATGAAATGTCACTGGGGATCTAA 1290 0.3698 MHYELPTFVSNHLSGKIPTSLGQCIKLQVILLSLNDFMGSIPTFKDIRKALIVCEIPSNLSHCRELRVLSLSFNQLTRGIPQAIGSLCNLEELYLAFNKLTGGIPREIGNLSNLNILYPFSKNLVSGYIPRRMGKLQNLAKLSLSQNRLQSPIPVEFGDLKTKSFIKKYILLTIASTVTLVAFIVLWIRRRDNMEIPAPIDSWLPGTHGKISYQQLLYATNDFGGDNLIGKGSLGMIYKGVLSNGLNVAIKVFNLEFQGALRSFNSECEVMQRIRHQNLVKIINCCSNLDFKALVLKYMPNGSLDKGLYSHNHFLDLIQRLNIMIDVASALEYLHLDCSSLVVHCDLKPNNVLLDDDMVAHVADFRITRLLIETKPMQQTKTLGTIGYMAPEYGLDGIVSIKVDVYSYGIFLMEVFARKKPMDEMSLGI* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0632 429 FunFam LRR receptor-like serine/threonine-protein kinase EFR 299 429 - -
Vvi10g0632 429 Gene3D Ribonuclease Inhibitor 7 47 IPR032675 -
Vvi10g0632 429 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 204 298 - -
Vvi10g0632 429 SUPERFAMILY Protein kinase-like (PK-like) 202 426 IPR011009 -
Vvi10g0632 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 342 354 IPR008271 GO:0004672|GO:0006468
Vvi10g0632 429 SMART serkin_6 223 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0632 429 ProSiteProfiles Protein kinase domain profile. 223 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0632 429 SUPERFAMILY L domain-like 10 162 - -
Vvi10g0632 429 Gene3D Transferase(Phosphotransferase) domain 1 299 428 - -
Vvi10g0632 429 FunFam Os02g0215700 protein 48 159 - -
Vvi10g0632 429 Gene3D Ribonuclease Inhibitor 48 175 IPR032675 -
Vvi10g0632 429 Pfam Protein kinase domain 227 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0632 429 PANTHER OS04G0122200 PROTEIN 55 160 - -
Vvi10g0632 429 Gene3D Phosphorylase Kinase; domain 1 193 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0632 Vvi-Chr10 8686343 8689367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0632 7 425 Receptor kinase-like Gene Family AT3G47570 36.275 9.95e-86 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi10g0632 Pkinase 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0632 - K13420 vri:117923495 519.235