Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0631 ATGAATCATCTTCAGAATCTGAAGGTATTGTCATTCCCAATGAACAACTTAACAGGTTCCATACCGGCCACCATTTTCAACATATCTTCTTTGCTCAATATTAGTCTCTCCAATAATAACCTCTCTGGGAGTCTTCCCATGGATATGTGCTACGCCAATCCAAAGCTCAAGGAGCTTAATCTTTCATCAAATCATTTGAGTGGAAAGATCCCCACTGGTTTAGGCCAATGTATACAGCTTCAAGTAATTTCCTTAGCATATAATGATTTCACGGGAAGCATACCAAATGGAATCGGTAACTTGGTGGAGCTTCAGAGATTGTCTCTACGGAATAACAGCCTGACAGGAGAAATCCCCTCCAATTTGTCGCATTGCAGAGAGCTTCGAGGGCTATCATTATCAATCAATCAGTTCACTGGAGGCATTCCACAAGCCATAGGGAGTTTATCCAACCTTGAAGAATTATATCTTAATTATAACAAATTGACAGGTGGAATTCCTAGAGAGATTGGGAATCTTTCAAATTTAAATATTTTGCAGTTAGGATCTAATGGAATCAGTGGCCCTATTCCTGCCGAAATTTTCACTGTCTCTTCGTTGCAAAGGATTATATTCGCGAATAATAGCCTTTCTGGGAGTCTTCCAATGGATATCTGTAAACATCTTCCTAATCTCCAAGGGCTCTATCTTTCTCAGAATCATCTCAGTGGTCAACTTCCTACAACTCTATCCTTATGTAGAGAGCTCCTATCACTAGCACTACCAATGAATAAATTCACAGGAAGCATACCAAGAGAAATTGGCAACTTATCAAAGCTTGAAGAGATCGATCTCAGCGAAAATAGCCTCATAGGTTCCATTCCAACTTCATTTGGTAATTTGATGACCTTAAAATTTCTTAGTTTTAACATCTCTAAACTACAGACCCTTGGGTTGGTGCAAAATCACCTTTCAGGCAGTCTCCCATCAAGTATTGGCACCTGGCTTCCGGATCTTGAAGGGCTTTATATAGGAATCAATGAATTCAGTGGAACAATTCCAATGTCTATTTCAAATATGTCGAAACTTACTGTGCTAAGTTTATCAGACAACTCCTTCACTGGTAATGTGCCAAAAGATCTCTGTAACCTGACAAAGCTTCAATTTCTCGACCTTGCATACAATCAATTGACTGATGAACACTTAGCCTCTGGGGTTGGTTTTCTTACTTCTTTGACAAATTGCAAATTTTTGAGAAATTTGTGGATAGGTTATAATCCTTTGACAGGTACTCTTCCAAATTCACTAGGGAATCTTCCCATTGCTCTTGAAATTTTTATTGCATCAGCCTGCCAATTCAGAGGAACCATTCCCACAGGAATTGGTAATTTGACCAATTTGATATGGCTGGACTTGGGAGCTAATGACTTGACAGGGTCCATTCCAACTACATTGGGACAGCTACAAAAGCTTCAGGCATTGTCCATTGTTGGAAATAGAATACGAGGATCCATTCCAAATGATCTGTGCCATTTGAAGAACTTGGGATACTTGCGTTTGAGTTATAACAAATTGTCTGGATCAATCCCAAGTTGTTTTGGAGATCTTCCTGCGCTACGAGAACTCTCTCTTGACTCCAATGTGTTAGCTTTCAACATTCCTATGTCCTTTTGGAGCCTTAGAGATCTGTTGGTTCTTAACTTGTCTTCAAATTTCTTGACTGGTAATCTACCTCCCGAAGTTGGAAACATGAAGTCCATTACAACATTGGACTTGTCAAAGAACCTAGTTTCAGGTTACATTCCAAGCAGGATGGGAAAACTACAAAATTTGATTACACTCTCCTTGTCCCAAAACAAACTACAAGGCCCAATACCTGTAGAATTTGGTGATTTGGTAAGCTTGGAATCCTTGGATCTATCCCAGAACAATTTATCCGGAACCATTCCCAAGACATTGGAGGCCCTTATTTATCTCAAGTATCTAAATGTTTCTTTCAATAAACTACAAGGAGAAATTCCGAATGGAGGACCTTTCGTAAAGTTCACTGCTGAATCGTTCATGTTCAATGAAGCCTTATGTGGAGCACCTCATTTTCAAGTCATGGCATGTGATAAAAACAACCGCACTCAATCATGGAAGACAAAGTCATTCATCTTGAAATATATTCTATTACCAGTCGGATCAACAGTAACTTTAGTGGTTTTCATTGTTCTGTGGATACGTAGACGAGATAACATGGAAATACCAACTCCAATTGATTCATGGCTCCCTGGAACACATGAAAAGATTTCACACCAGCAGCTTCTTTATGCAACAAACGACTTTGGTGAAGACAATTTGATTGGGAAAGGAAGCCAGGGCATGGTATATAAAGGGGTATTATCTAATGGCTTAACTGTTGCTATAAAGGTTTTCAATTTAGAATTCCAAGGAGCCTTGAGGAGTTTCAATTCAGAATGTGAAGTGATGCAAGGGATTCGCCATCGAAATCTTGTTAGGATAATTACCTGTTGCTCAAACCTCGATTTCAAAGCATTGGTACTTAAATATATGCCTAATGGAAGTCTTGAGAAGTTGTTGTATTCCCACTACTATTTTTTGGATCTCATCCAAAGATTAAACATTATGATAGATGTAGCATCAGCATTAGAGTACCTTCATCATGATTGTTCGAGCCTTGTGGTGCATTGCGACTTGAAGCCCAGTAATGTTTTGTTAGATGACGATATGGTTGCACATGTGGCGGATTTTGGGATCGCAAAACTCTTGACTGAAACAGAGTCTATGCAACAAACAAAGACCTTAAGCACAATAGGCTATATGGCACCAGTATTTGCAAGGAAGAAGCCTATGGATGAAATGTTCACTGGGGATCTAACCTTGAAGACTTGGGTAGAGTCATTATCCAATTCAGTGATACAGGTTGTTGATGTCAATCTATTGAGAAGAGAAGATGAAGACCTTGCCACAAAGCTAAGTTGTTTGTCCTCCATTATGGCTTTAGCTTTGGCATGTACAACCGATTCACCCGAGGAGCGGATCGACATGAAAGATGCGGTAGTTGAACTCAAGAAGAGCAGAATCAAACTATTGATCTATAATATAGTATTTACTTGTGTCAAACAATAG 3111 0.3928 MNHLQNLKVLSFPMNNLTGSIPATIFNISSLLNISLSNNNLSGSLPMDMCYANPKLKELNLSSNHLSGKIPTGLGQCIQLQVISLAYNDFTGSIPNGIGNLVELQRLSLRNNSLTGEIPSNLSHCRELRGLSLSINQFTGGIPQAIGSLSNLEELYLNYNKLTGGIPREIGNLSNLNILQLGSNGISGPIPAEIFTVSSLQRIIFANNSLSGSLPMDICKHLPNLQGLYLSQNHLSGQLPTTLSLCRELLSLALPMNKFTGSIPREIGNLSKLEEIDLSENSLIGSIPTSFGNLMTLKFLSFNISKLQTLGLVQNHLSGSLPSSIGTWLPDLEGLYIGINEFSGTIPMSISNMSKLTVLSLSDNSFTGNVPKDLCNLTKLQFLDLAYNQLTDEHLASGVGFLTSLTNCKFLRNLWIGYNPLTGTLPNSLGNLPIALEIFIASACQFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTTLGQLQKLQALSIVGNRIRGSIPNDLCHLKNLGYLRLSYNKLSGSIPSCFGDLPALRELSLDSNVLAFNIPMSFWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVSGYIPSRMGKLQNLITLSLSQNKLQGPIPVEFGDLVSLESLDLSQNNLSGTIPKTLEALIYLKYLNVSFNKLQGEIPNGGPFVKFTAESFMFNEALCGAPHFQVMACDKNNRTQSWKTKSFILKYILLPVGSTVTLVVFIVLWIRRRDNMEIPTPIDSWLPGTHEKISHQQLLYATNDFGEDNLIGKGSQGMVYKGVLSNGLTVAIKVFNLEFQGALRSFNSECEVMQGIRHRNLVRIITCCSNLDFKALVLKYMPNGSLEKLLYSHYYFLDLIQRLNIMIDVASALEYLHHDCSSLVVHCDLKPSNVLLDDDMVAHVADFGIAKLLTETESMQQTKTLSTIGYMAPVFARKKPMDEMFTGDLTLKTWVESLSNSVIQVVDVNLLRREDEDLATKLSCLSSIMALALACTTDSPEERIDMKDAVVELKKSRIKLLIYNIVFTCVKQ* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0631 1036 SUPERFAMILY RNI-like 310 668 - -
Vvi10g0631 1036 SMART LRR_typ_2 101 125 IPR003591 -
Vvi10g0631 1036 SMART LRR_typ_2 222 246 IPR003591 -
Vvi10g0631 1036 SMART LRR_typ_2 457 481 IPR003591 -
Vvi10g0631 1036 SMART LRR_typ_2 553 577 IPR003591 -
Vvi10g0631 1036 SMART LRR_typ_2 377 402 IPR003591 -
Vvi10g0631 1036 SMART LRR_typ_2 529 552 IPR003591 -
Vvi10g0631 1036 SMART LRR_typ_2 625 649 IPR003591 -
Vvi10g0631 1036 SMART LRR_typ_2 149 173 IPR003591 -
Vvi10g0631 1036 SMART LRR_typ_2 54 77 IPR003591 -
Vvi10g0631 1036 SMART LRR_typ_2 601 624 IPR003591 -
Vvi10g0631 1036 SMART LRR_typ_2 270 293 IPR003591 -
Vvi10g0631 1036 SMART LRR_typ_2 505 528 IPR003591 -
Vvi10g0631 1036 SMART LRR_sd22_2 149 175 - -
Vvi10g0631 1036 SMART LRR_sd22_2 4 30 - -
Vvi10g0631 1036 SMART LRR_sd22_2 601 622 - -
Vvi10g0631 1036 SMART LRR_sd22_2 270 296 - -
Vvi10g0631 1036 SMART LRR_sd22_2 101 124 - -
Vvi10g0631 1036 SMART LRR_sd22_2 625 648 - -
Vvi10g0631 1036 SMART LRR_sd22_2 481 503 - -
Vvi10g0631 1036 SMART LRR_sd22_2 353 379 - -
Vvi10g0631 1036 FunFam Os07g0541700 protein 845 932 - -
Vvi10g0631 1036 Pfam Protein kinase domain 772 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0631 1036 SUPERFAMILY Protein kinase-like (PK-like) 747 1017 IPR011009 -
Vvi10g0631 1036 FunFam Inactive leucine-rich repeat receptor-like protein kinase 403 697 - -
Vvi10g0631 1036 Gene3D Phosphorylase Kinase; domain 1 738 844 - -
Vvi10g0631 1036 Gene3D Ribonuclease Inhibitor 304 396 IPR032675 -
Vvi10g0631 1036 SUPERFAMILY RNI-like 3 303 - -
Vvi10g0631 1036 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 302 393 - -
Vvi10g0631 1036 PANTHER OS04G0122200 PROTEIN 302 1023 - -
Vvi10g0631 1036 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 750 844 - -
Vvi10g0631 1036 ProSitePatterns Serine/Threonine protein kinases active-site signature. 888 900 IPR008271 GO:0004672|GO:0006468
Vvi10g0631 1036 SMART serkin_6 769 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0631 1036 Pfam Leucine Rich Repeat 55 74 IPR001611 GO:0005515
Vvi10g0631 1036 Pfam Leucine Rich Repeat 411 432 IPR001611 GO:0005515
Vvi10g0631 1036 Pfam Leucine Rich Repeat 104 125 IPR001611 GO:0005515
Vvi10g0631 1036 Pfam Leucine Rich Repeat 272 294 IPR001611 GO:0005515
Vvi10g0631 1036 Gene3D Transferase(Phosphotransferase) domain 1 845 1026 - -
Vvi10g0631 1036 Gene3D Ribonuclease Inhibitor 397 706 IPR032675 -
Vvi10g0631 1036 ProSiteProfiles Protein kinase domain profile. 769 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0631 1036 Pfam Leucine rich repeat 126 186 IPR001611 GO:0005515
Vvi10g0631 1036 Pfam Leucine rich repeat 332 390 IPR001611 GO:0005515
Vvi10g0631 1036 Pfam Leucine rich repeat 504 542 IPR001611 GO:0005515
Vvi10g0631 1036 Pfam Leucine rich repeat 579 638 IPR001611 GO:0005515
Vvi10g0631 1036 Gene3D Ribonuclease Inhibitor 1 303 IPR032675 -
Vvi10g0631 1036 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 56 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0631 Vvi-Chr10 8669519 8678278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0631 578 668 Receptor kinase-like Gene Family AT3G47570 37.363 3.10e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi10g0631 Pkinase 7.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0631 - K13420 vvi:100256042 1974.13