Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0630 ATGAAACTGTTGAGGAATCAGGAAAGTTGTTGGGTCAACCCAATGCTTCTTTTTACACCTTATGTTTTAGTGCTTTTTTGGGTGCATTGCTTCACACCCATGGTGTTGTCCTTCAATTTAGTTGATGAGTTTGCCCTTATTGCTTTGAAAGCCCATATCACATATGATTCTCAAGGCATGTTGGCAACAAATTGGTCTACAAAAAGCTCCCATTGCAGTTGGTATGGTATTTCTTGCAATGCTCCTCAACAAAGAGTTTCTGCAATCAATCTCTCTAACATGGGTCTTGAAGGAACTATTGCGCCACAAGTCGGCAACCTTTCATTTCTTGTTTCGCTTGATCTTAGTAATAACTACTTCGATGGCTCTCTTCCTAAGGATATTGGTAAGATTCTCATAAATTTTTTGAATTTATTCAATAATAAACTAGTTGGAAGTATTCCAGAAGCCATTTGTAATTTATCAAAACTTGAAGAGCTATATCTTGGCAATAATCAGTTGATTGGTGAAATTCCAAAGAAGATGAGTAATCTTCTTAATCTGAAGGTATTGTCATTCCCAATGAACAACTTAACAGGTTCCATACCAACCACCATTTTCAACATGTCTTCTTTGCTCAACATTAGTCTCTCCTATAATAGCCTCTCTGGGAGTCTTCCCATGGATATATGCTACGCCAATCTAAAGCTCAAGGAGCTTAATCTTTCATCAAATCATTTGAGTGGAAAGGTCCCCACCGGTTTAGGCCAATGTATAAAGCTTCAAGGAATTTCCTTATCATGTAATGATTTCACGGGAAGCATACCAAGTGGAATTGGTAATTTGGTAGAGCTTCAGAGCTTATCTCTCCAGAATAACAGCTTGACAGAAGGTGAAATCTCTAGTTTTTCTCATTGTCGAGAGCTTCGAGTGCTAAAATTATCAATCAATCATGGTCAACTTCCTACAACTCTATTTTTATGTGGAGAGCTCCTGTTACTGTCATTATCAATCAATAAATTCACGGGAAGCATACCAAGAGACATTGGCAACTTATCAAAGCTTGAAAAGATCTATCTAAGCACCAATAGCCTCATAGGTTCCATTCCAACTTCATTTGGTAATTTGAAGGCCTTAAAATTCCTTCAGTTGGGGTCCAACAATCTTACAGGGACGATACCAGAAGATATTTTTAACATCTCTAAACTACAGACCCTTGCGTTGGCGCAAAATCACCTTTCAGGCGGTCTTCCATCAAGTATTGGCACTTGGCTTCCAGATCTTGAAGGGCTTTTTATAGGAGGCAATGAATTCAGTGGAACAATTCCAGTGTCTATTTCAAATATGTCAAAACTTATCCGGCTACACATATCGGACAACTATTTCACTGGTAATGTGCCAAAAGATCTCAGTAACCTAAGGAAGCTTGAAGTTCTCAACCTTGCAGGCAATCAATTGACTGATGAACACTTAACCTCTGAGGTTGGTTTTCTTACTTCTTTGACAAATTGCAAATTTTTGAGAACATTGTGGATAGATTATAATCCTTTAAAAGGCACTCTTCCAAATTCACTAGGGAATCTTTCCGTTGCTCTTGAAAGTTTTACAGCATCAGCCTGCCATTTCAGAGGAACCATTCCCACAGGAATTGGTAATTTGACCAATTTGATATGGCTGGACCTGGGAGCTAATGACTTAACAGGGTCGATTCCAACTACATTGGGACATCTACAAAAGCTCCAACGATTGTACATTGCTGGAAATAGAATACAAGGATCCATTCCAAATGATCTTTGCCATTTGAAGAACTTGGGATACTTGCATTTGAGTTCTAACAAATTGTCTGGATCAATCCCAAGTTGTTTTGGAGATCTTCCTGCGCTACGAGAACTCTCTCTTGACTCCAATGTGTTAGCTTTCAACATTCCTATGTCCTTTTGGAGCCTTAGAGATTTGATGGTTCTTAGCTTGTCTTCAAATTTCTTGACTGGTAATCTACCTCCCGAAGTTGGAAACATGAAGTCCATTACAACATTGGACCTGTCAAAGAACCTTATTTCAGGTTACATTCCAAGAAGGATGGGAGAACTACAAAATTTGGTTAATCTTTGCTTGTCCCAAAACAAACTACAAGGCTCAATACCTGTAGAATTTGGTGATTTGCTAAGCTTGGAATCCATGGATCTATCTCAGAACAATTTATTTGGAACCATTCCCAAGTCATTGGAGGCCCTTATTTATCTCAAGCATCTAAATGTTTCTTTCAATAAACTACAAGGAGAAATTCCGAATGGAGGACCTTTCGTAAATTTCACTGCTGAATCGTTCATCTTCAATGAAGCCTTATGTGGAGCACCTCATTTTCAAGTCATAGCATGTGATAAAAACAACCGCACTCAATCATGGAAGACAAAGTCATTCATCTTGAAATATATTCTACTACCAGTCGGATCAGCAGTAACTTTAGTGGCTTTCATTGTTCTGTGGATACGTAGACGAGATAACACGGAAATACCAGCTCCAATTGATTCATGGCTTCCTGGAGCACATGAAAAAATTTCACAGCAGCAACTTCTTTATGCAACAAATGGCTTTGGTGAAGACAATTTGATTGGGAAAGGAAGCCTAGGCATGGTATACAAAGGGGTATTATCTAATGGCTTAACTGTTGCTATAAAGGTTTTCAATTTAGAATTCCAAGGAGCCTTGAGGAGTTTCGATTCAGAATGTGAAGTGATGCAAGGGATCTGCCACCGAAATCTTATCAGGATAATTACCTGTTGCTCAAACCTTGATTTCAAAGCATTGGTGCTCGAATATATGCCTAAAGGAAGTCTTGATAAGTGGTTGTATTCTCATAACTATTTTTTGGATCTCTTCCAAAGATTAAATATTATGATAGATGTAGCATCGGCATTGGAGTATCTTCATCATGATTGTTCGAGCCTTGTGGTGCATTGCGACTTGAAGCCCAGTAATGTTTTGTTAGATAACAACATGGTTGCTCATGTGGCTGATTTTGGGATTGCAAGACTCTTAACTGAAACAGAGTCTATGCAGCAAACAAAGACCTTGGGCACAATAGGTTATATGGCACCAGAGTATGGCTCAGATGGGATAGTATCCACAAAGGGCGATGTTTATAGCTATGGGATCTTGCTTATGGAAGTATTTGCAAGGAAGAAGCCTATGGATGAAATGTTCACTGGGGATGTAACCTTGAAGACTTGGGTGGAGTCATTATCCAGTTCAGTGATAGAGGTTGTTGATGCCAATCTATTGAGAAGAGATGATGAAGACCTTGCCACAAAGCTGAGCTATTTATCCTCACTTATGGCTTTAGCTTTGGCATGTACAGCTGATTCACCTGAGGAGAGGATCAACATGAAAGATGTGGGTGAATGTGTGCAAACTAGAAGGTGCCAAGTGCATCTATATGGGCCTAAGGTGATGCCTAATGGGCCTAAGTCTAAATTAGGGCTGCCAAGAGTCACAACGGGGTTAGATAAATCCCTCAACCAAAGTCTCCGAGGTGGCTCAAAAAAGGTAAGTAGTGTGAGTAGCTATGGGCCACCAAGGAACTACTGTAAAGTATCGAACAAGTATCTAATAGGACATGTGCTAGGAGGACAAAATTGGGGGTCTACATGA 3630 0.3945 MKLLRNQESCWVNPMLLFTPYVLVLFWVHCFTPMVLSFNLVDEFALIALKAHITYDSQGMLATNWSTKSSHCSWYGISCNAPQQRVSAINLSNMGLEGTIAPQVGNLSFLVSLDLSNNYFDGSLPKDIGKILINFLNLFNNKLVGSIPEAICNLSKLEELYLGNNQLIGEIPKKMSNLLNLKVLSFPMNNLTGSIPTTIFNMSSLLNISLSYNSLSGSLPMDICYANLKLKELNLSSNHLSGKVPTGLGQCIKLQGISLSCNDFTGSIPSGIGNLVELQSLSLQNNSLTEGEISSFSHCRELRVLKLSINHGQLPTTLFLCGELLLLSLSINKFTGSIPRDIGNLSKLEKIYLSTNSLIGSIPTSFGNLKALKFLQLGSNNLTGTIPEDIFNISKLQTLALAQNHLSGGLPSSIGTWLPDLEGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFTGNVPKDLSNLRKLEVLNLAGNQLTDEHLTSEVGFLTSLTNCKFLRTLWIDYNPLKGTLPNSLGNLSVALESFTASACHFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTTLGHLQKLQRLYIAGNRIQGSIPNDLCHLKNLGYLHLSSNKLSGSIPSCFGDLPALRELSLDSNVLAFNIPMSFWSLRDLMVLSLSSNFLTGNLPPEVGNMKSITTLDLSKNLISGYIPRRMGELQNLVNLCLSQNKLQGSIPVEFGDLLSLESMDLSQNNLFGTIPKSLEALIYLKHLNVSFNKLQGEIPNGGPFVNFTAESFIFNEALCGAPHFQVIACDKNNRTQSWKTKSFILKYILLPVGSAVTLVAFIVLWIRRRDNTEIPAPIDSWLPGAHEKISQQQLLYATNGFGEDNLIGKGSLGMVYKGVLSNGLTVAIKVFNLEFQGALRSFDSECEVMQGICHRNLIRIITCCSNLDFKALVLEYMPKGSLDKWLYSHNYFLDLFQRLNIMIDVASALEYLHHDCSSLVVHCDLKPSNVLLDNNMVAHVADFGIARLLTETESMQQTKTLGTIGYMAPEYGSDGIVSTKGDVYSYGILLMEVFARKKPMDEMFTGDVTLKTWVESLSSSVIEVVDANLLRRDDEDLATKLSYLSSLMALALACTADSPEERINMKDVGECVQTRRCQVHLYGPKVMPNGPKSKLGLPRVTTGLDKSLNQSLRGGSKKVSSVSSYGPPRNYCKVSNKYLIGHVLGGQNWGST* 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0630 1209 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 294 495 - -
Vvi10g0630 1209 SUPERFAMILY L domain-like 254 517 - -
Vvi10g0630 1209 ProSitePatterns Serine/Threonine protein kinases active-site signature. 977 989 IPR008271 GO:0004672|GO:0006468
Vvi10g0630 1209 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 839 933 - -
Vvi10g0630 1209 SMART LRR_sd22_2 570 592 - -
Vvi10g0630 1209 SMART LRR_sd22_2 690 711 - -
Vvi10g0630 1209 SMART LRR_sd22_2 275 298 - -
Vvi10g0630 1209 SMART LRR_sd22_2 154 180 - -
Vvi10g0630 1209 SMART LRR_sd22_2 345 371 - -
Vvi10g0630 1209 SMART LRR_sd22_2 594 620 - -
Vvi10g0630 1209 SMART LRR_sd22_2 714 737 - -
Vvi10g0630 1209 FunFam Inactive leucine-rich repeat receptor-like protein kinase 496 786 - -
Vvi10g0630 1209 Gene3D Ribonuclease Inhibitor 417 491 IPR032675 -
Vvi10g0630 1209 Gene3D Ribonuclease Inhibitor 316 416 IPR032675 -
Vvi10g0630 1209 Pfam Protein kinase domain 861 1125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0630 1209 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 934 1138 - -
Vvi10g0630 1209 Gene3D Transferase(Phosphotransferase) domain 1 934 1137 - -
Vvi10g0630 1209 FunFam Nuclear pore complex protein NUP107 41 192 - -
Vvi10g0630 1209 Pfam Leucine Rich Repeat 716 738 IPR001611 GO:0005515
Vvi10g0630 1209 Pfam Leucine Rich Repeat 229 248 IPR001611 GO:0005515
Vvi10g0630 1209 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Vvi10g0630 1209 SUPERFAMILY Protein kinase-like (PK-like) 837 1127 IPR011009 -
Vvi10g0630 1209 Gene3D Ribonuclease Inhibitor 155 315 IPR032675 -
Vvi10g0630 1209 Gene3D Ribonuclease Inhibitor 492 788 IPR032675 -
Vvi10g0630 1209 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 193 293 - -
Vvi10g0630 1209 SMART LRR_typ_2 618 641 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 275 298 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 369 393 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 107 131 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 229 251 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 546 569 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 594 617 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 690 713 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 642 666 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 570 593 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 345 368 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 714 738 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 466 491 IPR003591 -
Vvi10g0630 1209 SMART LRR_typ_2 154 178 IPR003591 -
Vvi10g0630 1209 SUPERFAMILY L domain-like 526 780 - -
Vvi10g0630 1209 ProSiteProfiles Protein kinase domain profile. 858 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0630 1209 Pfam Leucine rich repeat 421 479 IPR001611 GO:0005515
Vvi10g0630 1209 Pfam Leucine rich repeat 593 631 IPR001611 GO:0005515
Vvi10g0630 1209 Gene3D Phosphorylase Kinase; domain 1 826 933 - -
Vvi10g0630 1209 Gene3D Ribonuclease Inhibitor 42 150 IPR032675 -
Vvi10g0630 1209 SMART serkin_6 858 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0630 1209 SUPERFAMILY L domain-like 51 311 - -
Vvi10g0630 1209 PANTHER OS04G0122200 PROTEIN 358 1123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0630 Vvi-Chr10 8641580 8656811 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0630 24 588 Receptor kinase-like Gene Family AT3G47570 32.263 2.17e-79 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi10g0630 Pkinase 5.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0630 - K13420 vri:117923495 1501.49