Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0619 ATGGAAGAGTTAAAACAAGTAAATTGCAAGGAGCTTCAACAACTGAATTTATTTAATAATAAATTGGTTGGAGGCATTCCAGAAGCCATTTGTAATTTATCAAAACTTGAAGAGCTATATCTTGGGAATAATCAGTTGATTGGTGAAATTCCAAAGAAAATGAATCATCTTCAGAATCTGAAGGTATTGTCATTCCCAATGAACAACTTAACAGGTTCCATACCGGCCACCATTTTCAATATATCTTCTTTGCTCAATATTAGTCTCTCCAATAATAACCTCTCTGGGAGCCAATGTATACAGCTTCAAGTAATTTCCTTAGCATATAATGATTTCACAGGAAGCATACCAAGTGGAATCGGTAACTTGGTGGAGCTTCAGAGATTGTCTCTACAGAATAACAGCTTCACAGGAGAAATCCCTCAATTATTGTTCAACATCTCTTCGTTGAGGTTTTTGAATCTAGCAGTGAATAACCTAGAAGGTGAAATCCCCTCCAATTTGTCGCATTGCAGAGAGCTCCGAGTGCTATCATTATCTTTCAATCAGTTCACTGGAGGCATTCCACAAGCCATAGGGAGTTTATCCAACCTTGAAGAATTATATCTTAGTCATAACAAATTGACAGGTGGAATTCCTAGAGAGATTGGGAATCTTTCAAATTTAAATATTTTGCAATTAAGCTCTAATGGAATAAGTGGCCCTATTCCTGCCGAAATTTTCAATAATCATCTCAGTGGAAGCATACCAAAAGAAATTGGCAACTTATCAAAGCTTGAAAAGATCTATCTAGGCACAAATAGCCTCATAGGTTCCATTCCAACTTCATTTGGCAGCCTCCCATCAAGTATTGGCACCTGGCTCTCGGATCTTGAAGGGCTTTTTATAGCAGGCAATGAATTCAGTGGAATAATTCCAATGTCTATTTCAAATATGTCAAAACTTACCGTGCTAGGTTTATCAGCTAACTCCTTCACTGGTAATGTTGGTTTTCTTACTTCTTTGACAAATTGCAAATTTTTGAAAAATTTGTGGATAGGAAATAATCCTTTCAAAGGTACTCTTCCAAATTCACTAGGGAATCTTCCCATTGCTCTTGAAAGTTTTATTGCATCAGCCTGCCAATTCAGAGGAACCATTCCCACAAGAATTGGTAATTTGACCAATTTGATATGGCTGGACTTGGGAGCTAATGACTTGACAGGGTCAATACCAACTACATTGGGACGACTAAAGAAGCTCCAAAAGTTGCACATTGTTGGAAATAGATTACGAGGATCCATTCCAAATGATCTTTGCCATTTGAAGAACTTGGGATACTTGCATTTGAGTTCTAACAAATTGTCTGGATCAATCCCAAGTTTTGGAAACATGAAGTCCATTACAACATTGGACTTGTCAAAGAACCTAGTTTCAGAATTTGTCATGGCATGTGATAAAAACAACCGCACTCAATCATGGAAGACAAAACGAGATAACATGGAAATACCAACTCCAATTGATTCATGGCTCCCTGGAACACATGAAAAGATTTCACACCAGCAGCTTCTTTATGCAACAAACGACTTTGGTGAAGACAATTTGATTGGGAAAGGAAGCCAGGGCATGTTTCGATTCAGAATATTAAACATTATGATAGATGTAGCATCAGCATTAGAGTACCTTCATCATGATTGTTCGAGCCTTGTGGTGCATTGTGACTTGAAGCCCAATAATGTTTTGTTAGATGACGATATGGTTGCTCATGTGGCCGATTTTGGGATCACAAAACTCTTGACTAAAACAGAGTCTATGCAGCAAACAAAGACCTTAGGCACAATAGGCTATATGGCACCAGCAGAGCATGGCTCAGATGGGATAGTATCCACAAAGAGCGATGTTTATAGCTATGGGATCTTGTTGATGGAAGTATTTTCAAGGAAGAAGCCTATGGATGAAATGTTCACTGGGGATCTAACCTTGAAGACTTGGGTAGAGTCATTATCCAATTCAGTGATACAGGTTGTTGATGCCAATCTATTGAGAAGAGAGGATGAAGACCTTGCCACAAAGCTAAGTTGTTTGTCCTCCATTATGGCTTTAGCTTTGGCATGTACAACCGATTCACCTGAGGAGAGGCTCAACATGAAAGACGCGGTGGTTGAACTCAAGAAGAGCAGAATGAAACTGTTGATGTAA 2178 0.3861 MEELKQVNCKELQQLNLFNNKLVGGIPEAICNLSKLEELYLGNNQLIGEIPKKMNHLQNLKVLSFPMNNLTGSIPATIFNISSLLNISLSNNNLSGSQCIQLQVISLAYNDFTGSIPSGIGNLVELQRLSLQNNSFTGEIPQLLFNISSLRFLNLAVNNLEGEIPSNLSHCRELRVLSLSFNQFTGGIPQAIGSLSNLEELYLSHNKLTGGIPREIGNLSNLNILQLSSNGISGPIPAEIFNNHLSGSIPKEIGNLSKLEKIYLGTNSLIGSIPTSFGSLPSSIGTWLSDLEGLFIAGNEFSGIIPMSISNMSKLTVLGLSANSFTGNVGFLTSLTNCKFLKNLWIGNNPFKGTLPNSLGNLPIALESFIASACQFRGTIPTRIGNLTNLIWLDLGANDLTGSIPTTLGRLKKLQKLHIVGNRLRGSIPNDLCHLKNLGYLHLSSNKLSGSIPSFGNMKSITTLDLSKNLVSEFVMACDKNNRTQSWKTKRDNMEIPTPIDSWLPGTHEKISHQQLLYATNDFGEDNLIGKGSQGMFRFRILNIMIDVASALEYLHHDCSSLVVHCDLKPNNVLLDDDMVAHVADFGITKLLTKTESMQQTKTLGTIGYMAPAEHGSDGIVSTKSDVYSYGILLMEVFSRKKPMDEMFTGDLTLKTWVESLSNSVIQVVDANLLRREDEDLATKLSCLSSIMALALACTTDSPEERLNMKDAVVELKKSRMKLLM* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0619 725 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 371 472 - -
Vvi10g0619 725 SUPERFAMILY L domain-like 192 470 - -
Vvi10g0619 725 ProSiteProfiles Protein kinase domain profile. 414 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0619 725 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 3 97 - -
Vvi10g0619 725 SMART LRR_sd22_2 195 221 - -
Vvi10g0619 725 SMART LRR_sd22_2 33 52 - -
Vvi10g0619 725 SMART LRR_sd22_2 435 466 - -
Vvi10g0619 725 SMART LRR_sd22_2 57 83 - -
Vvi10g0619 725 SMART LRR_sd22_2 256 282 - -
Vvi10g0619 725 Pfam Protein kinase domain 540 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0619 725 Gene3D Ribonuclease Inhibitor 4 97 IPR032675 -
Vvi10g0619 725 Gene3D Ribonuclease Inhibitor 98 329 IPR032675 -
Vvi10g0619 725 Pfam Leucine rich repeat 172 232 IPR001611 GO:0005515
Vvi10g0619 725 Pfam Leucine Rich repeats (2 copies) 436 470 IPR025875 -
Vvi10g0619 725 SMART serkin_6 414 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0619 725 Gene3D Ribonuclease Inhibitor 330 515 IPR032675 -
Vvi10g0619 725 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 525 725 - -
Vvi10g0619 725 FunFam Piriformospora indica-insensitive protein 2 380 476 - -
Vvi10g0619 725 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 98 337 - -
Vvi10g0619 725 SUPERFAMILY RNI-like 8 279 - -
Vvi10g0619 725 Gene3D Transferase(Phosphotransferase) domain 1 527 723 - -
Vvi10g0619 725 ProSiteProfiles Leucine-rich repeat profile. 437 459 IPR001611 GO:0005515
Vvi10g0619 725 SMART LRR_typ_2 123 147 IPR003591 -
Vvi10g0619 725 SMART LRR_typ_2 219 243 IPR003591 -
Vvi10g0619 725 SMART LRR_typ_2 256 279 IPR003591 -
Vvi10g0619 725 SMART LRR_typ_2 435 457 IPR003591 -
Vvi10g0619 725 SMART LRR_typ_2 195 218 IPR003591 -
Vvi10g0619 725 SMART LRR_typ_2 33 57 IPR003591 -
Vvi10g0619 725 SMART LRR_typ_2 387 411 IPR003591 -
Vvi10g0619 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Vvi10g0619 725 SUPERFAMILY Protein kinase-like (PK-like) 540 715 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0619 Vvi-Chr10 8501860 8506094 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0619 12 724 Receptor kinase-like Gene Family AT3G47090 31.008 5.89e-81 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi10g0619 Pkinase 2.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0619 - K13420 vvi:104880527 508.834