Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0612 ATGCTAGGTGGGTTATACGGAGATCTCCCGCCCCCCTCCTCGGCTGATGAAGACAAACCGACCAATTCGTCGGTTTGGTCGAGCAGCGCCAAAATGGCGCCGGCTGCGTTGCGCAAGCCGTCGTCGGTTTTTGCGCCTCCGCAGTCTGTTCTTAAAACCCAACACGCCCAAGCCAAACCCAAAACCCTAAATTCATCGAAAATTTTGATTTCGCCGGGGCTGGCACCGTCGCCTTCCGTGCTACCCAATGAAGGGGCGAGAAGTCCCTCATTTCAGCCCGCATTGGTCGGGGTCACATCGTCGGTGGTTGAAGAGTATGACCCCGCAAGACCCAATGATTACGAGGACTATAGGAGGGAAAGGAAGAGGAAGGCTATGGAGGCGGAGATGAAGAGAGAGCTCGAGAGGAGGCGGCAAGAGGAGGAGGAGAGGGAGAGAGAGCGGAGAGAAAGGGAAGCAGCAGAAAGGGAAAGGGAGTATGGGGATTCAAGGTTGAATATTTCAGGTGAGGAAGCATGGAGGCGGCGTGCAGCGATGAGCGGAGCTGTGCCAAGGTCACCTTCTCCACCAACGAGTGGAGATGGGTTTACTATAGGGAAGTCAGAAACGGTTGGATTGGGGGTTGGAGCGGGTGGGCAAATGACTGCAGCACAAAGAATGATGGCGAAAATGGGTTGGAAGGAGGGGCAAGGGCTTGGGAAGCAGGAACAGGGAATTACTACTCCTTTGATGGCCAAGAAGACTGATCGGCGAGCTGGGGTTATTGTGAATGCTAGTGAATCTAAACCAGAGAAGAAGGTGAAGAGTGTCAACTTTAACAGTCCACCAACCCGGGTACTGCTGCTCAGAAACATGGTGGGCCCTGGTGAGGTGGATGATGAACTAGAAGACGAGGTTGGGTCAGAGTGTGCAAAATACGGCACAGTGACTCGAGTACTCATATTTGAGATAACAGAGCCAAACTTCCCAGTAGATGAGGCAGTTAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACCACAAAAGCCCTTGTTGACCTGGATGGTCGCTTTTTTGGTGGGAGGGTGGTTCACGCCACATTCTATGATGAAGACAGGTTCAGCAAGAACGAGCTGGCTCCCATGCCAGGGGAAATCCCTGGTTTCACTTGA 1152 0.5278 MLGGLYGDLPPPSSADEDKPTNSSVWSSSAKMAPAALRKPSSVFAPPQSVLKTQHAQAKPKTLNSSKILISPGLAPSPSVLPNEGARSPSFQPALVGVTSSVVEEYDPARPNDYEDYRRERKRKAMEAEMKRELERRRQEEEERERERREREAAEREREYGDSRLNISGEEAWRRRAAMSGAVPRSPSPPTSGDGFTIGKSETVGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASESKPEKKVKSVNFNSPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVHATFYDEDRFSKNELAPMPGEIPGFT* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0612 383 Coils Coil 123 159 - -
Vvi10g0612 383 Pfam G-patch domain 216 255 IPR000467 GO:0003676
Vvi10g0612 383 PIRSF SPF45 3 379 IPR040052 GO:0045292
Vvi10g0612 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 364 IPR000504 GO:0003723
Vvi10g0612 383 MobiDBLite consensus disorder prediction 46 72 - -
Vvi10g0612 383 CDD RRM_UHM_SPF45 276 372 IPR034653 -
Vvi10g0612 383 Gene3D - 273 372 IPR012677 -
Vvi10g0612 383 SUPERFAMILY RNA-binding domain, RBD 280 367 IPR035979 GO:0003676
Vvi10g0612 383 SMART G-patch_5 211 257 IPR000467 GO:0003676
Vvi10g0612 383 MobiDBLite consensus disorder prediction 1 198 - -
Vvi10g0612 383 PANTHER SPLICING FACTOR 45 SPF45 1 374 IPR040052 GO:0045292
Vvi10g0612 383 ProSiteProfiles G-patch domain profile. 213 259 IPR000467 GO:0003676
Vvi10g0612 383 SMART rrm2_1 279 360 IPR003954 GO:0003676
Vvi10g0612 383 MobiDBLite consensus disorder prediction 16 30 - -
Vvi10g0612 383 MobiDBLite consensus disorder prediction 108 171 - -
Vvi10g0612 383 FunFam Putative splicing factor 45 277 363 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0612 219 254 C2H2 Transcription Factor Family AT5G26610 61.111 5.93e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0612 K12840 - vvi:100265303 674.47