Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0609 ATGGCGCTTTCTATGCACAAAGAGTCTAAGCAGCAGATGGATTCCAGCAAGTATGTAAGGTATACGCCCGAGCAGGTTGAAGCTTTAGAGAGGGTGTATAGTGAATGCCCAAAGCCAAGCTCCATGAGAAGGCAGCAGCTCATAAGAGAGTGTCCCATACTCTCTAATATCGAGCCCAAACAGATCAAAGTCTGGTTTCAAAATCGCAGGTGCCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTCCAGACTGTGAATCGGAAGTTGACTGCAATGAACAAGCTGTTGATGGAAGAGAATGACCGGTTACAGAAGCAGGTCTCGCAGTTGGTTTATGAAAATGGATACATGAGACAGCAGCTGCAGAGTGCATCTACAGCGACCACAGACACTAGCTGCGAGTCTGTGGTCATGAGCGGTCAGCACCAACAACAGCAAAACCCAACACCTCAGCATCCTCAAAGGGATGCAAGCAACCCAGCTGGTCTACTCGCAATAGCTGAGGAGACCCTGGCAGAGTTCCTGTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGGTTGCGGAAATCCTCAAAGATCGTCCATCTTGGTTTCGTGACTGCCGATGCCTCGATGTATTGAGTGTAATCCCTACAGGAAATGGGGGGACAATAGAACTCATATACATGCAGACATATGCTCCTACAACATTGGCATCAGCACGTGATTTTTGGACATTGAGATATACTACAAGCTTGGAAGATGGCAGTCTAGTGATTTGTGAGAGGTCATTGACATCTTCTACTGGTGGCCCTACTGGACCCCCTGCATCAAGTTATATAAGAGCGGAAATGCTTCCTAGTGGCTATCTAATCCGACCTTGTGAGGGTGGTGGCTCCATTATTCACATTGTTGATCATGTTGATTTGGATGCATGGAGTGTTCCTGAAGTTCTTAGGCCGCTATATGAATCATCTAAAATTCTCGCTCAGAAAACGACTGTTGCTGCATTACGGCACATACGACAAATTGCACAAGAAACCAGTGGAGAAATTCAGTATGGTGGGGGCCGCCAACCTGCTGTTTTAAGGACGTTTAGCCAGAGATTGTGCAGGGGGTTCAATGATGCTGTTAATGGGTTTGCGGATGATGGTTGGTCGCTCATGGGTAGTGATGGGGTGGAGGACGTAACCATTGTGATTAACTCATCTCCAAGCAAATTCCTCGGGCCCCAGTATAACTCAACAATGTTTCCAACTTTTGGAGGTGGCGTGCTGTGTGCCAAAGCATCAATGCTGCTACAGAATGTTCCCCCTGCTTTACTTGTTCGATTCCTGAGAGAACACCGTTCTGAGTGGGCTGACTATGGTGTTGATGCTTATTCTGCTGCATGTCTTAAAGCTAGTCCTTATGAAGTTCCCTGTGCAAGACCTGGAGGCTTCCCCAGTAGCCAGGTCATTTTACCTCTCGCCCATACAGTGGAGCATGAGGAGTTCTTGGAGGTGGTTCGTCTAGAAGGACATGCATTCTCGCCTGAGGATGTGGCTTTGACACGGGACATGTACTTACTACAGCTATGCAGTGGGGTTGATGAGAATGCAGCTGGTGCCTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGGATGGACCTGCTGCTACTAGGACATTGGATTTGGCCTCTACACTTGAAGTGGGAGCTGGTGGGGCACGCCCAGCCAATGAGTCTGATTTGAACAATTATAACCTCAGATCTGTTCTGACTATTGCATTCCAATTTACTTTTGAGAACCATGTTCGAGACAATGTGGCTGCTATGGCTCGCCAATATGTACGTAGTGTTATGGCCTCTGTTCAGAGGGTTGCCATGGCTATTGCCCCTTCCCGGCTCAGCTCCCATATGGGCCTAAAACCACTTCCTGGTTCTCCTGAGGCTCTTACTTTGGCACGGTGGATTTGTCGTAGCTACAGGATTCACACTGGGGGAGAGCTCCTTCGGGTTGACTCCCAAGGTGGTGATGCTGTCTTGAAGTTACTTTGGAACCATTCTGATGCAATCATGTGCTGCTCCCTGAAAACAAATGCATCTCCAGTTTTCACATTTGCTAACCAGGCTGGGCTTGATATGCTTGAAACCACTCTGGTGGCCCTTCAAGATATAATGCTAGACAAGATTCTTGATGAAGCTGGGAGGAAGATTCTCTGCTCTGAGTTCTCTAAGATCATGCAACAGGGCTTTGCGTATCTGCCAGCAGGGATATGCACATCCAGCATGGGCAGGCCTGTGTCTTATGAGCAGGCCATTGCATGGAAAGTCCTGAACGATGAGGACTCCAATCACTGCCTGGCTTTCATGTTTATAAACTGGTCCTTTGTGTGA 2538 0.4842 MALSMHKESKQQMDSSKYVRYTPEQVEALERVYSECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYMRQQLQSASTATTDTSCESVVMSGQHQQQQNPTPQHPQRDASNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLASARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPASSYIRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKTTVAALRHIRQIAQETSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFADDGWSLMGSDGVEDVTIVINSSPSKFLGPQYNSTMFPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYEVPCARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALTRDMYLLQLCSGVDENAAGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDGPAATRTLDLASTLEVGAGGARPANESDLNNYNLRSVLTIAFQFTFENHVRDNVAAMARQYVRSVMASVQRVAMAIAPSRLSSHMGLKPLPGSPEALTLARWICRSYRIHTGGELLRVDSQGGDAVLKLLWNHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFSKIMQQGFAYLPAGICTSSMGRPVSYEQAIAWKVLNDEDSNHCLAFMFINWSFV* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0609 845 MobiDBLite consensus disorder prediction 131 158 - -
Vvi10g0609 845 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Vvi10g0609 845 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Vvi10g0609 845 Pfam START domain 166 373 IPR002913 GO:0008289
Vvi10g0609 845 SUPERFAMILY Bet v1-like 413 600 - -
Vvi10g0609 845 SUPERFAMILY Bet v1-like 166 377 - -
Vvi10g0609 845 Gene3D - 184 379 IPR023393 -
Vvi10g0609 845 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Vvi10g0609 845 FunFam homeobox-leucine zipper protein ATHB-15 201 382 - -
Vvi10g0609 845 MobiDBLite consensus disorder prediction 131 156 - -
Vvi10g0609 845 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
Vvi10g0609 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 845 IPR044830 GO:0003700
Vvi10g0609 845 Gene3D - 8 83 - -
Vvi10g0609 845 SMART HOX_1 14 80 IPR001356 GO:0003677
Vvi10g0609 845 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Vvi10g0609 845 CDD homeodomain 17 77 IPR001356 GO:0003677
Vvi10g0609 845 Coils Coil 86 113 - -
Vvi10g0609 845 CDD START_ArGLABRA2_like 160 376 - -
Vvi10g0609 845 CDD bZIP 69 108 - -
Vvi10g0609 845 Pfam MEKHLA domain 700 844 IPR013978 -
Vvi10g0609 845 SMART START_1 165 375 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0609 Vvi-Chr10 8333683 8341185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0609 5 845 Homeobox Transcription Factor Family AT2G34710 80.473 0.0 1398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi10g0609 START 1.7e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0609 K09338 - vvi:100254822 1682.54