Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0608 ATGACGTCTTCTGTGCATGATCTTTCTGATAATAGTGAAGCTGACGAGCCGCAAAAACACTCAGAACTTCAAGTTCAGTCTTCATCTCCTGCAGCTGGAGCGTCCCATCCTGGCAGTGCAGCTGCAAACATTCCATATGCAACACCTCCACAACTTGGGGCAGGACATGCTATGGCACAAGCAGCCTACCCATATCCAGATCCTTACTATAGAAGTATCTTTGCTCCCTATGATGCACAGCCCTATCCTGCACAACATTACAGCGGACAACCTATGGTCCACCTTCAGTTGATGGGAATTCAGCAAGCTGGAGTTCCTTTGCCATCAGATGCAGTTGAGGAGCCTGTGTTTGTTAATGCAAAACAATATCATGGCATTTTACGGCGGCGACAATCTCGTGCAAAAGCTGAATCAGAAAATAAAGTTGTTAAATCTCGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCATTGAGAAGAGCTAGGGGATGTGGGGGCCGGTTCCTGAATTCAAAGAAAAATGAAAGCGAACAGAACGAAGTGGCATCGGGTGACAAATCACAGTCCAATATCAATCTCAACTCTGATAAAAATGAACTTGCCTCCTCTGATAGCACATCTTGA 627 0.4561 MTSSVHDLSDNSEADEPQKHSELQVQSSSPAAGASHPGSAAANIPYATPPQLGAGHAMAQAAYPYPDPYYRSIFAPYDAQPYPAQHYSGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVVKSRKPYLHESRHLHALRRARGCGGRFLNSKKNESEQNEVASGDKSQSNINLNSDKNELASSDSTS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0608 208 Gene3D - 112 173 - -
Vvi10g0608 208 MobiDBLite consensus disorder prediction 172 208 - -
Vvi10g0608 208 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 207 IPR001289 GO:0003700|GO:0006355
Vvi10g0608 208 MobiDBLite consensus disorder prediction 165 208 - -
Vvi10g0608 208 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 114 169 IPR001289 GO:0003700|GO:0006355
Vvi10g0608 208 ProSitePatterns NF-YA/HAP2 subunit signature. 117 137 IPR018362 GO:0003677|GO:0016602
Vvi10g0608 208 SMART cbf3 111 172 IPR001289 GO:0003700|GO:0006355
Vvi10g0608 208 ProSiteProfiles NF-YA/HAP2 family profile. 112 172 IPR001289 GO:0003700|GO:0006355
Vvi10g0608 208 MobiDBLite consensus disorder prediction 1 46 - -
Vvi10g0608 208 PRINTS CCAAT-binding transcription factor subunit B signature 146 169 IPR001289 GO:0003700|GO:0006355
Vvi10g0608 208 PRINTS CCAAT-binding transcription factor subunit B signature 115 137 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0608 Vvi-Chr10 8295928 8310149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0608 1 208 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.692 2.03e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vvi10g0608 CBFB_NFYA 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0608 K08064 - vvi:100249692 404.831