Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0605 ATGGAGGACGCGGAAGGAGTTCTGAGTTTTGACTTCGAGGGCGGCCTCGACGCTGCTCCCGGCACAGCGGCCACGGTCGCGCCTTTGATACAATCGGACGCGACCGCCGCGGCGGCGGCTCCATCTTCCGTCGTCTCCGCGGAGCCCACTCCTGGCGGCGCCCCCGGCAGGCGCAGCTTTCGGCAGACGGTGTGCCGGCACTGGCTGCGCAGCCTCTGTATGAAAGGCGACGCCTGCGGCTTCCTCCACCAGTACGACAAGTCGCGCATGCCTGTTTGCCGATTCTTTAGATTGTACGGAGAGTGTCGTGAGCAGGACTGCGTGTACAAGCATACCAATGAAGATATCAAGGAGTGTAACATGTACAAGTTGGGTTTTTGTCCAAATGGTTCTGACTGCCGGTATAGGCATGCAAAGCTGCCTGGACCTCCACCTACCATGGAAGAAGTCTTTCAGAAGATTCAGCAGTTGAGTTCTTTCAACTATGGCTCCTCAAACAGGTTTTATCAAAACCGCAACCCATACAACCAACAAACAGAAAAATCTCAGATTCTGCAAGGTTCCAATGCTGTCAATCTAGGTACAGTTGCAAAATCATCAACCACAGAGGCTATTAATGTGCAGCAACAACAAGTTCAACCACCCCAACAACAGGTCAGCCAGACCCCGATGCAAAATCTTCCCAATGGCCTGCCTAATCAGGCGAACAAAACTGCTTCACCACTTCCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGCTGCAACCGTGAAAATTTGGAATTATCTGTACAACAAGGGGTATGGGCAACCCAAAGGAGCAATGAGGCTAAACTAAATGAAGCTTTTGACAGTGTTGAGAATGTGATTTTGATCTTTTCAGTGAACCGGACTCGCCATTTCCAGGGTTGTGCAAAGATGACATCTAAAATTGGTGGATTTGTTGGTGGAGGGAATTGGAAATATGCGCATGGAACTGCACACTATGGACGGAATTTCTCTGTCAAATGGTTAAAGCTATGTGAACTGTCATTCCACAAAACTCGCCATTTGAGGAATCCATACAATGAAAACCTACCAGTGAAGATAAGCAGAGACTGCCAGGAGTTAGAGCCGTCAATTGGTGAACAGTTGGCTTCCTTACTATATCTTGAGCCAGACAGTGAACTTATGGCAATCTCACTTGCAGCAGAATCAAAACGTGAGGAGGAAAAAGCAAAGGGAGTCAATCCAGACAATGGAGGTGAGAATCCAGATATTGTTCCATTTGAGGACAATGAAGAGGAGGAGGAGGAAGAAAGTGAAGAAGAGGAGGAGAGCTTTGGCCAGGCTCTTGGGCCAGCAGCTCAAGGCAGAGGAAGGGGCAGAGGAATCATGTGGCCTCCTCACATGCCACTAGCACGAGGAGCCAGACCTATTCCTAGCATGCGGGGCTTCCCCCCTGTCATGATGGGTGCTGATGGGTTTTCTTATAGTGCTGTTCCACCAGATGGTTTTGCAATGCCAGATATTTTTGGTGTGGGTCCCCGTGCTTTCCCTCCATATGGTCCCAGGTTTTCTGGGGATTTCACAGGTCCTGCATCTGGCATGATGTTTCCTGGCCGCGGTCAACCGGGAGCTGTCTTTCCAGCAAGTGGGTATGGGATGATGATGGGTCCAGGACGTGCACCATTCATGGGAGGGATGGGAGTTCCTGCAGCAGCCCCAACTCGAGCTGGTCGGCCAGTTGGTATGCCTCCAATGTTCCCACCGCCTCCACCCCCAAACTCGCAGAACAATCGAACTAAAAGGGATCAGAGGACACCAGTTAATGACCGAAATGACAGATACAGTGGGGGCTCAGACCAGGGCAGGGGCCAAGATATGGCAGGTCCAGATGATGAGACACAATATCTGCAAGGATTGAAGTCTCAACAGGATGATCAATTTGGAGGTGGAAATAGCTTTAGAAATGATGAAAGCGAAAGCGAGGACGAGGCTCCAAGGCGGTCAAGGCATGGAGAGGGAAAGAAGAAGCGGTGA 2022 0.5035 MEDAEGVLSFDFEGGLDAAPGTAATVAPLIQSDATAAAAAPSSVVSAEPTPGGAPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGSDCRYRHAKLPGPPPTMEEVFQKIQQLSSFNYGSSNRFYQNRNPYNQQTEKSQILQGSNAVNLGTVAKSSTTEAINVQQQQVQPPQQQVSQTPMQNLPNGLPNQANKTASPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSKIGGFVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISLAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESEEEEESFGQALGPAAQGRGRGRGIMWPPHMPLARGARPIPSMRGFPPVMMGADGFSYSAVPPDGFAMPDIFGVGPRAFPPYGPRFSGDFTGPASGMMFPGRGQPGAVFPASGYGMMMGPGRAPFMGGMGVPAAAPTRAGRPVGMPPMFPPPPPPNSQNNRTKRDQRTPVNDRNDRYSGGSDQGRGQDMAGPDDETQYLQGLKSQQDDQFGGGNSFRNDESESEDEAPRRSRHGEGKKKR* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0605 673 Gene3D - 55 117 - -
Vvi10g0605 673 ProSiteProfiles Zinc finger C3H1-type profile. 113 140 IPR000571 GO:0046872
Vvi10g0605 673 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 43 668 IPR045168 -
Vvi10g0605 673 Pfam YT521-B-like domain 247 309 IPR007275 GO:0003723
Vvi10g0605 673 Pfam YT521-B-like domain 326 381 IPR007275 GO:0003723
Vvi10g0605 673 ProSiteProfiles Zinc finger C3H1-type profile. 59 86 IPR000571 GO:0046872
Vvi10g0605 673 Gene3D ph1033 like domains 231 385 - -
Vvi10g0605 673 ProSiteProfiles YTH domain profile. 247 382 IPR007275 GO:0003723
Vvi10g0605 673 MobiDBLite consensus disorder prediction 651 665 - -
Vvi10g0605 673 MobiDBLite consensus disorder prediction 631 650 - -
Vvi10g0605 673 MobiDBLite consensus disorder prediction 399 459 - -
Vvi10g0605 673 MobiDBLite consensus disorder prediction 576 591 - -
Vvi10g0605 673 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Vvi10g0605 673 SMART c3hfinal6 115 139 IPR000571 GO:0046872
Vvi10g0605 673 SMART c3hfinal6 59 85 IPR000571 GO:0046872
Vvi10g0605 673 MobiDBLite consensus disorder prediction 569 673 - -
Vvi10g0605 673 MobiDBLite consensus disorder prediction 421 440 - -
Vvi10g0605 673 SUPERFAMILY CCCH zinc finger 61 84 IPR036855 GO:0046872
Vvi10g0605 673 MobiDBLite consensus disorder prediction 212 239 - -
Vvi10g0605 673 CDD YTH 248 382 IPR007275 GO:0003723
Vvi10g0605 673 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 54 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0605 Vvi-Chr10 8166244 8207848 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi10g0605 YTH 1e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0605 K14404 - vvi:100253258 1291.56