Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0590 ATGGCTAGGGCAGTATATTCCAAGTCAGATATATACATATTTGATGATCCTTTAAGTGCTCTAGATGCACATGTTGCTCAACAGGTTTTCAGAGACTGCATCAAGGAAGAGTTGCGTGGAAAAACTAGAGTTCTTGTTACAAACCAGCTACATTTTCTTCCTGAAGTGGATAGAATTATCCTAGTTTCTGAAGGAATGGTGAAACAGGATGGAACCTTTGATGAGCTCTCTAAAAACAGCATGCTATTCCAAAAGCTAATGGAAAATGCTGGGAAGATGGACAAACGAATGGAAGAGAAGGAATGCAGCAAGAATCTAAGTCATAATAAATCAAAACCCACTGCTAACTATGCAGTGGATAAGTTATCAAAAAATGCAAGCTATTTTAATGAGAAAAAAGAAGGTAAATCTGTACTTATCAAGCAGGAAGAACGGGAAACAGGTGTTGTTAGTTGGAATGTTCTGATGAGGTATAAAGATGCATTAGGCGGCCTATGGGTAGTTGTGGTACTCTTTGCATGCTATGTGTTGACAGAAGTTCTTCGAATTGGAAGTAGCACCTGGTTAAGCTTCTGGACGGATCAAAGCACATTAGATGATTATAGACCCGGTTACTATAATCTGATTTTTGCACTTCTATCATTTGGTCAGGTAACAGCAACATTGGCAAACTCTTTTTGGTTGATCATTTCAAGTCTTTATGCAGCCAAAAGATTGCATGATGCCATGTTAAACTCTATTTTAAGATCTCCAATGGTATTCTTCCATACCAACCCCATTGGGCGGATAATTAATAGGTTTGCAAAGGATATGGGTGATATAGATCGAAATATTGCCAATTATGTGAATTTGTTTCTGGGAAGATTATGGCAGCTCCTCTCAACTTTTGTACTGATAGGCATTGTGAGCACCGTATCCCTGTGGGCCATAATGCCTCTTCTGATCTTGTTCTATACAGTCTATCTATATTATCAGAGCACATCTCGTGAAGCCAAACGTTTGGATGCCATTACCAGATCTCCTGTTTATGCACAATTTGCAGAAGCATTCAATGGTTTATCAACCATTCGTGCATATAAAGCATATGATCAGATGGCAAATATTAATGGGATATCCATGGATAATAATATTAGATTCTCCCTGATTATAAGTAGCACAGATGGCTGGCTTGCAATAAGATCGGCAATATTAGGAGGCCTCATAATTTGGTTGACTGCAAGCTTTGCTGTCATGGAAAATGTAAGAACAGAAAACCAGGCAGCCTTTGCATCAACAATGGGTCTGCTTCTCAGTTATGCTTTAAATATCAAGAATCTGTTGAGTGGCGTTCTCAGAAATGCAAGTGCGGCAGAAAATAGTTTAAATGCAATTGAGCGTGTCTGCACGTATGTTGATTTGCCTTCTGAGGCTCCAGCTCCCATTGAAAACAACCGTCCTCCACCTGGTTGGCCTTCATCAGGATCAATCAAGTTTCAGGACATTGTTCTACGTTACAGGCCTGAACTCCCACCAGTGTTGCATGGATTATCATTCAAAATTTCTCCAAGTGAGAAATTAGGAATAGCTGGAAGGACTGGTGCAGGGAAATCTAGCATGATCAATGCTCTATTTCAGATTGTGGAACTAGAAAGTGGAAGAATCTTGATTGATGAGTATGACATTTCAAAATTTGGACTTACAGATCTCCGTAAAGTTTTAAGTATCATACCACAATCACCAATTCTTTTCTCTGGTACTGTGAGATTTAATCTTGATCCTTTCAATGAGCACAATGATGCTGACCTTTGGAAGGCTCTAAAGAGAGCACATCTCAAGGACTTCATTAGGATGAATTCTTTTGGTCTGGATGCAGAGGTCTTGGAGAGAGGGGAGAATTTCAGTGTTGGGCAGAGACAACTATTAAGTCTTGCTCGAGCTTTGCTGCGGAGATCAAAGATTCTCATCCTTGACGAGGCAACTGCAGCTGTTGATGTAAAAACTGATGCTCTTATTCAAAAAACCATTCGAGAGGAGTTCAAAACATGCACAATGCTTATTATTGCTCACCGACTAAATACCATAATCGACTGTGACCGGATCCTTGTCCTTGATTCTGGTCAGGTTCTAGAGTATGATACCCCAGAGGAATTACTGCTCAATGAAGGAAGCTCTTTTTCTAAGATGGTTAAAAGTACAGGAGCTGCAAATGCTGAGTACTTGCGCAGATTAGTACTTGGAGAGGAAGGAGAGGAGGCCATGCAACTGGACAGGCAGCCAAGATTGCTTGCTTCTTTGCGCTAA 2280 0.4026 MARAVYSKSDIYIFDDPLSALDAHVAQQVFRDCIKEELRGKTRVLVTNQLHFLPEVDRIILVSEGMVKQDGTFDELSKNSMLFQKLMENAGKMDKRMEEKECSKNLSHNKSKPTANYAVDKLSKNASYFNEKKEGKSVLIKQEERETGVVSWNVLMRYKDALGGLWVVVVLFACYVLTEVLRIGSSTWLSFWTDQSTLDDYRPGYYNLIFALLSFGQVTATLANSFWLIISSLYAAKRLHDAMLNSILRSPMVFFHTNPIGRIINRFAKDMGDIDRNIANYVNLFLGRLWQLLSTFVLIGIVSTVSLWAIMPLLILFYTVYLYYQSTSREAKRLDAITRSPVYAQFAEAFNGLSTIRAYKAYDQMANINGISMDNNIRFSLIISSTDGWLAIRSAILGGLIIWLTASFAVMENVRTENQAAFASTMGLLLSYALNIKNLLSGVLRNASAAENSLNAIERVCTYVDLPSEAPAPIENNRPPPGWPSSGSIKFQDIVLRYRPELPPVLHGLSFKISPSEKLGIAGRTGAGKSSMINALFQIVELESGRILIDEYDISKFGLTDLRKVLSIIPQSPILFSGTVRFNLDPFNEHNDADLWKALKRAHLKDFIRMNSFGLDAEVLERGENFSVGQRQLLSLARALLRRSKILILDEATAAVDVKTDALIQKTIREEFKTCTMLIIAHRLNTIIDCDRILVLDSGQVLEYDTPEELLLNEGSSFSKMVKSTGAANAEYLRRLVLGEEGEEAMQLDRQPRLLASLR* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0590 759 CDD ABC_6TM_ABCC_D2 168 464 IPR044726 GO:0140359
Vvi10g0590 759 Gene3D - 473 725 IPR027417 -
Vvi10g0590 759 Gene3D - 1 115 IPR027417 -
Vvi10g0590 759 SMART AAA_5 515 708 IPR003593 GO:0016887
Vvi10g0590 759 ProSitePatterns ABC transporters family signature. 626 640 IPR017871 GO:0005524|GO:0016887
Vvi10g0590 759 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 730 - -
Vvi10g0590 759 SUPERFAMILY ABC transporter transmembrane region 165 473 IPR036640 GO:0005524|GO:0016020
Vvi10g0590 759 FunFam Predicted protein 3 115 - -
Vvi10g0590 759 FunFam Multidrug resistance-associated protein member 4 473 725 - -
Vvi10g0590 759 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 169 452 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0590 759 Gene3D ABC transporter type 1, transmembrane domain 130 470 IPR036640 GO:0005524|GO:0016020
Vvi10g0590 759 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 489 723 IPR003439 GO:0005524
Vvi10g0590 759 Pfam ABC transporter 506 654 IPR003439 GO:0005524
Vvi10g0590 759 CDD ABCC_MRP_domain2 487 707 - -
Vvi10g0590 759 Pfam ABC transporter transmembrane region 169 410 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0590 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 88 IPR027417 -
Vvi10g0590 759 FunFam ABC transporter C family member 2 132 470 - -
Vvi10g0590 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 715 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0590 Vvi-Chr10 7733376 7752585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0590 486 729 Calmodulin-binding Proteins AT2G36910 31.600 1.73e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0590 - - vvi:100246392 1221.84