Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0584 ATGGCTTTTGGGCCGTTGGTTTGGTATTGCAGGCCAGTCACAAATGGGGTGTGGGCCAAATTAGTGGATAATGCATTTGGTGTTTACACACCCTGTGCAACTGATACCTTGGTGATTTCCATATCTCATTTTATCCTTCTAAGTCTGTGCTTCTATCGAATATGGCGGATTAAGAAGGATTTCAAAGTCCAGAGGTTTTGCTTGAGGTCAAATTACTATAATTATATGTTGGCATTATTGGCTGGTTATTGTACTGCTGAGCCTTTGTTCAGATTGATCATGGGTATCTCAGTCTTTAATCTCGATGGCCAAGCAGGTCTTGCTCCATTTGAGGTGGTTTCCCTGATCATTAAGGCTTTTACTTGGTGCTCTATGCTCGTCTTGATCGGAATAGAAACTAAAGTATACATCCGTGAGTTTCGATGGTATCTCAGATTTGGAGTCCTTTATACTTTGATAGGGGAAGCTGTGATGCTCAATCTCATTCTTTCAGTGAAGGAGTTGTATGATAGGTCTATTCTGTATTTGTACATCAGTGAGGTCGTCTTGCAGGTTTTATTTGGGATATTGTTGCTCTTCTATGTTCCTGACCTGGATCCTTATCCGGGTTATACCCCAATGTGGACTGGATCGGTTGACGATGCAGAATATGAAGAAATTCCAGGAGGAGAGCAAATTTGTCCTGAGAGGCATGTCAACATATTTTCAAGAATTACTTTTGGATGGATGAATCCCATCATGCAGCTAGGCTCCAAAAGACCAATTACAGAGAAGGATGTCTGGAAATTAGATTCCTGGGACCAGACTGAGACACTGAACAACAACTTCCAGAGATGCTGGGCTGAGGAAGCTCTAAGGCCTAAACCATGGCTCTTAAGAGCATTAAATCGTAGCCTTGGTGGAAGGTTTTGGTGGGGAGGTTTTTGGAAGATTGGCAATGATCTTTCCCAATTTGTGGGCCCACTTATTCTGAACCAGCTCTTACAGTCTATGCAACAAGGAGATCCAGCTTGGATTGGTTATATCTATGCTTTCTCAATTTTTGTTGGAGTGGTATTCGGGGTATTATTTGAAGCTCAGTATTTTCAGAATGTCATGCGTGTGGGTTTCCGGGTTAGATCAACTTTGGTTGCTGCTGTGTTTCGAAAATCCTTAAAGCTAACACATGAGGGTCGCAGACAATTTGCATCTGGAAAAATAACCAACCTTATGACGACTGATGCTGAAGCCCTCCAGCAAATATGCCAATCACTTCACACTTTGTGGTCAGCTCCATTCCGTATCATCATTGCAATGGTTCTTCTTTACCAGCAGTTGGGTGTTGCTTCACTTCTTGGTGCACTAATGCTCGTTCTTCTGTTTCCAATACAGACTGTAGTGATCAGCAGAATGCAGAAACTATCAAAGGAAGGGTTGCAACGTACAGACAAGAGGATTGGCCTCATGAATGAAATTTTGGCTGCCATGGACACTGTAAAGTGCTATGCATGGGAGAATAGTTTCCAATCCAAAGTTCAGAGTGTCAGGAATGAAGAATTGTCATGGTTCCGGAAAGCATCATTTCTGGGAGCATTTAATGTTTTTATGCTAAACAGCATTCCAGTTGTAGTGATTGTGATTTCATTTGGGATGTTCACTCTGCTTGGAGGGGATCTCACACCTGCAAGGGCATTTACATCACTTTCTCTGTTTGCAGTCCTACGGTTTCCCCTGTTTATGCTTCCTAATATAATAACCCAGGCTGTAAATGCAAATGTATCCTTGAAGCGACTGGAGGAACTATTCTTAGCTGAAGAGAGAATTCTTCTACCAAATCCACCTCTTGAACCTGGACTTCCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATTCAAAGGCTGACAGGCCTACATTGTCGAATGTCAATTTGGATATACCAGTTGGTGGTTTGGTTGCAATTGTCGGCGGTACTGGAGAAGGAAAAACATCACTTGTATCGGCAATGCTGGGGGAGCTGCCTCCAATGTCAGATGCAAGTGCTGTTATAAGAGGAACAGTTGCTTATGTTCCACAAGTTTCATGGATTTTCAATGCCACTGTGCGGGGTAACATATTATTTGGATCTCCCTTTGAAGCAGCGAGATATGAGAAAGCAATAGATGTGACTGCATTGCAGCATGACCTTGACTTACTGCCTGGTGGTGATCTTACTGAGATTGGTGAAAGGGGGGTGAATATTAGTGGTGGTCAAAAGCAACGAGTTTCCATGGCTAGGGCAGTATATTCCAATTCAGATGTGTACATATTTGATGACCCTTTAAGTGCTCTAGATGCTCATGTGGGTCGACAGGTTTTTGATAGATGCATCAAGGGAGAATTAAGAGGGAAAACCAGAGTTCTCGTCACAAACCAGCTACATTTTCTTTCACAGGTTGATAGAATTATCCTAGTACATGAAGGTATGGTGAAGGAGGAGGGGACCTTTGAGGAACTATCTAATAATGGGATGATGTTCCAAAAACTGATGGAAAATGCGGGAAAAATGGAAGAGTATGTGGAAGAAAATGGTGCTGAGGAAAATATTGATGATAAAACCTCAAAGCCTGTTGCTAATGGGGTGGTGGACAAACTTCCAAATAATTCAAGCAACACAAGTAAACCAAAAGAGGGAAAATCTGTTCTTATCAAGCAGGAAGAACGGGAAACAGGTGTTGTCAGTTGGAAAGTTTTGGTGAGGTATAAGAATGCTTTAGGAGGCCTATGGGTAGTTATGATACTCTTTATGTGCTATATCCTGACTGAAACTCTACGGGTTTCAAGCAGCACATGGTTAAGTCAATGGACAGATCAAGGTGGTTCAAGGACTCATGGACCTGGTTACTACAATCTGATATATGCAATGTTGTCATTTGGTCAGGTACTGGTGACATTGGCAAATTCATATTGGTTGATCATGTCAAGTCTTTATGCAGCCAAAAGGTTGCATGATGCTATGCTTGGCTCTATTTTAAGAGCTCCAATGCTTTTCTTCCATACCAATCCAATTGGACGGATAATCAATAGATTTGCAAAGGATCTAGGTGACATAGATCGCAATGTTGCCGTATTCGTAAATATGTTTCTGGGCCAAATTTCCCAACTCCTTTCAACTTTTGTGTTGATAGGGATTGTGAGCACCATGTCCTTGTGGGCCATAATGCCACTTCTGGTATTGTTCTATTCGGCCTATCTATATTACCAGAACACAGCCCGTGAAGTAAAGCGGTTGGATTCCATAACCAGATCACCTGTTTATGCACAATTTGGAGAAGCGCTGAATGGACTCTCAACAATTCGTGCTTACAAAGCATATGATCGGATGGCTGATATTAATGGACAATCCATGGACAACAATATAAGATACACCCTTGTGAACATGAGTTCGAACCGCTGGCTTGCAATCCGTCTGGAAGCATTAGGGGGACTCATGATTTGGTTAACTGCAACCTTTGCTGTCATGCAGAATGAGAGGGCAGAAAACCAGCAGGCATTTGCATCTACTATGGGTCTGCTTCTCAGTTATGCTTTAAATATTACTAGTCTATTGACTGGTGTACTGAGACTTGCTAGTCTAGCTGAAAATAGTTTGAATTCTGTTGAGCGAGTTGGCTCTTATATAGAATTGCCTTCAGAAGCTCCACTTGTAATTGAGAGCAATCGTCCCCCTCCTGCATGGCCTTCATCAGGATCCATCAAATTTGAGGATGTTGTTCTACGTTACAGGCCTGAACTTCCTCCAGTCTTGCATGGATTGTCCTTCACAATTTCTCCAAGTGACAAGGTAGGAATAGTTGGAAGGACTGGGGCAGGCAAATCTAGCATGCTTAATGCTTTATTTCGGATTGTAGAACTGGAAAGGGGAAGAATCTTGATTGATGATTGTGACATTTCAAAGTTTGGACTGAGGGATCTACGTAAAGTTCTTGGTATTATACCACAATCACCAGTTCTTTTCTCAGGAACTGTGCGATTCAATCTTGATCCTTTCAACGAGCACAATGATGCTGACCTCTGGGAGGCTTTAGAGAGGGCACATTTGAAGGATGTTATCAGGAGGAATTCTCTTGGTCTTGATGCTGAGGTTTCCGAGGCCGGAGAGAATTTCAGTGTTGGACAGAGGCAACTTTTAAGTCTTGCTCGAGCATTGCTGCGGAGATCAAAGATTCTTGTTCTTGATGAAGCAACAGCTGCTGTTGATGTCAGAACTGATGCTCTCATTCAGAAAACCATTAGAGAAGAATTTAAATCATGTACAATGCTCATTATTGCTCATCGTCTAAATACCATCATTGATTGTGATCGAGTTCTTTTGCTTGATGCTGGTCGGGTTCTAGAATATGATACCCCAGAGGAACTGCTTTCAAATGATAGAAGTGCTTTCTCTAAGATGGTTCAAAGTACTGGAGCTGCCAATGCTGAATACTTACGCAGCCTAGTACTTGGTGGGGAAGGAGAGAACAAGTTGGGCAGGGAAGACAACAGGCGGCTTGATGGGCAGAGAAGATGGCTGGCCTCTTCCCGCTGGACTGCTGCTGCACAGTTTGCTCTTGCTGTTAGCCTCACTTCATCACAGAATGACCTTCAGCAGCTGGAGATTGAAGATGAAAACAGCATCCTCAAGAAAACAAAGGACGCAGTTATAACTCTGCAGGGAGTTTTGGAAGGAAAGCATGACAAAGTTATTGAAGAGACACTAAATCAATACCAGGTTTCTAGAGATGGATGGTGGTCATCCCTCTACAGAATGATTGAAGGTCTAGCAGTGATGAGCAGGTTGGCTCGAAACAGGCTTCAGTCAGAAAATGGTTTTGAAGACAGATCAATTGACTGGGACCGTATCGAAATGTAG 4872 0.4261 MAFGPLVWYCRPVTNGVWAKLVDNAFGVYTPCATDTLVISISHFILLSLCFYRIWRIKKDFKVQRFCLRSNYYNYMLALLAGYCTAEPLFRLIMGISVFNLDGQAGLAPFEVVSLIIKAFTWCSMLVLIGIETKVYIREFRWYLRFGVLYTLIGEAVMLNLILSVKELYDRSILYLYISEVVLQVLFGILLLFYVPDLDPYPGYTPMWTGSVDDAEYEEIPGGEQICPERHVNIFSRITFGWMNPIMQLGSKRPITEKDVWKLDSWDQTETLNNNFQRCWAEEALRPKPWLLRALNRSLGGRFWWGGFWKIGNDLSQFVGPLILNQLLQSMQQGDPAWIGYIYAFSIFVGVVFGVLFEAQYFQNVMRVGFRVRSTLVAAVFRKSLKLTHEGRRQFASGKITNLMTTDAEALQQICQSLHTLWSAPFRIIIAMVLLYQQLGVASLLGALMLVLLFPIQTVVISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWENSFQSKVQSVRNEELSWFRKASFLGAFNVFMLNSIPVVVIVISFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQAVNANVSLKRLEELFLAEERILLPNPPLEPGLPAISIKNGYFSWDSKADRPTLSNVNLDIPVGGLVAIVGGTGEGKTSLVSAMLGELPPMSDASAVIRGTVAYVPQVSWIFNATVRGNILFGSPFEAARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDRCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNNGMMFQKLMENAGKMEEYVEENGAEENIDDKTSKPVANGVVDKLPNNSSNTSKPKEGKSVLIKQEERETGVVSWKVLVRYKNALGGLWVVMILFMCYILTETLRVSSSTWLSQWTDQGGSRTHGPGYYNLIYAMLSFGQVLVTLANSYWLIMSSLYAAKRLHDAMLGSILRAPMLFFHTNPIGRIINRFAKDLGDIDRNVAVFVNMFLGQISQLLSTFVLIGIVSTMSLWAIMPLLVLFYSAYLYYQNTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGQSMDNNIRYTLVNMSSNRWLAIRLEALGGLMIWLTATFAVMQNERAENQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNSVERVGSYIELPSEAPLVIESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTISPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDCDISKFGLRDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRVLLLDAGRVLEYDTPEELLSNDRSAFSKMVQSTGAANAEYLRSLVLGGEGENKLGREDNRRLDGQRRWLASSRWTAAAQFALAVSLTSSQNDLQQLEIEDENSILKKTKDAVITLQGVLEGKHDKVIEETLNQYQVSRDGWWSSLYRMIEGLAVMSRLARNRLQSENGFEDRSIDWDRIEM* 1624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0584 1623 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Vvi10g0584 1623 SUPERFAMILY ABC transporter transmembrane region 915 1219 IPR036640 GO:0005524|GO:0016020
Vvi10g0584 1623 Gene3D - 1222 1475 IPR027417 -
Vvi10g0584 1623 ProSitePatterns ABC transporters family signature. 1376 1390 IPR017871 GO:0005524|GO:0016887
Vvi10g0584 1623 CDD ABCC_MRP_domain1 615 815 - -
Vvi10g0584 1623 Pfam ABC transporter 1256 1404 IPR003439 GO:0005524
Vvi10g0584 1623 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Vvi10g0584 1623 FunFam ABC transporter C family member 2 882 1220 - -
Vvi10g0584 1623 MobiDBLite consensus disorder prediction 870 885 - -
Vvi10g0584 1623 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Vvi10g0584 1623 Gene3D - 610 865 IPR027417 -
Vvi10g0584 1623 Gene3D ABC transporter type 1, transmembrane domain 281 601 IPR036640 GO:0005524|GO:0016020
Vvi10g0584 1623 Gene3D ABC transporter type 1, transmembrane domain 881 1220 IPR036640 GO:0005524|GO:0016020
Vvi10g0584 1623 CDD ABCC_MRP_domain2 1237 1457 - -
Vvi10g0584 1623 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1239 1473 IPR003439 GO:0005524
Vvi10g0584 1623 SMART AAA_5 1265 1458 IPR003593 GO:0016887
Vvi10g0584 1623 SMART AAA_5 642 820 IPR003593 GO:0016887
Vvi10g0584 1623 FunFam ABC transporter C family member 2 609 855 - -
Vvi10g0584 1623 Pfam ABC transporter transmembrane region 918 1164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0584 1623 Pfam ABC transporter transmembrane region 307 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0584 1623 SUPERFAMILY ABC transporter transmembrane region 287 595 IPR036640 GO:0005524|GO:0016020
Vvi10g0584 1623 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
Vvi10g0584 1623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 838 IPR027417 -
Vvi10g0584 1623 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0584 1623 MobiDBLite consensus disorder prediction 852 888 - -
Vvi10g0584 1623 CDD ABC_6TM_ABCC_D2 918 1214 IPR044726 GO:0140359
Vvi10g0584 1623 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1480 - -
Vvi10g0584 1623 FunFam Multidrug resistance-associated protein member 4 1223 1475 - -
Vvi10g0584 1623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1228 1470 IPR027417 -
Vvi10g0584 1623 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1202 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0584 1623 FunFam ABC transporter C family member 2 279 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0584 Vvi-Chr10 7566899 7609340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0584 604 829 Calmodulin-binding Proteins AT2G36910 29.508 6.69e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0584 - - vvi:100251535 3179.81