Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0576 ATGGTGGAGTCGCAACGGGATTCGGACGGTGAGGTTTTGAATTCGAGTCACAGCTCAATGAGCAGTGAGAGTTGCAGCAGTTTGAGATTGAGTTTCAGTCGGCTTTCGTTCGAGCACTCGCCGGAGAATCTGACGCTGAAGCCGCATCGCTCGTCGGACTCGGCGTACGAGGCCATCCGCTCCGCCGCATTTAGCCGGAAGTCCGGGCTCAGTTTCAGGGACTTCAAGCTGGTTCGCCGGATCGGCTCCGGAGACATCGGGACCGTGTACCTCTGCCGGTTGCGGAGCTCGTCGGACGATGACGGGTGCTTCTACGCCATGAAGGTGGTGGACAAGGAAACTTTGGCTATGAAGAAGAAGATTCAGAGGGCGGAGATGGAGAAGAGGATCCTGAAGATGCTGGACCACCCTTTCTTGCCCACGCTGTACGCCGAATTTGAAGCTTCCCATTTCTCAGGTATCGTCATGGAGTACTGTTCTGGTGGCGACCTGCACTCCCTCAAACACAAACAGCCTCAGAAGCGCTTTTCTCTCAGCTCTGCAAGGTTTTACGCTGCCGAGGTTCTTGTAGCCCTGGAGTACCTCCACATGTTAGGCATCATCTACAGAGACCTAAAGCCTGAGAACGTATTGGTCAGATCCGACGGTCACATCATGCTCTCCGACTTTGACCTCTCCCTCTGCTCCAATGCGATCCCAGCCGTCGAATCTCCTGATTTTTCCCCAGATTCCCCATCCCCCGCGTCTCCACCCAACTGCCGTACACCCTCCCCTTTCTCCTGCCTCTTCCGGTCCAGGAAGGTCCAAACCCTCTCCATCAACCGGCTCTTCGTGGCCGAACCGGTCTCCGCCAAGTCCTGCTCCTTCGTTGGGACCCACGAGTACGTGTCACCGGAGGTGGCATCCGGGAGGTCCCACGGCAACGGCGTGGACTGGTGGGCCCTGGGCATCTTCATCTACGAGATGGTGTACGGGGCCACCCCGTTCGCGGGCGCAACCAACGAGGCTACGCTGCGAAACATAGTGAAAAAGCCTCTGAGCTTCCCAACAGAGACGCCGGCGAGTGTGAGTGAGATGCACGCGCGGGACCTAATGTCGGGACTATTGGTCAAAGACCCGGCGAGTCGGCTCGGGTCAAAACGAGGCGCCGCTGACGTCAAGACCCACCCCTTCTTTAAAGGCCTCAACTTCGCTCTCGTACGTTCTCTTACACCGCCAGAGATTCCGGGTCTAAGGCGACACAAAACGCCGTCGTTTCGGCCAGACTCTGCAAATTCAAACAAGGGGCGATATCATCATCAGCAGCAGCAGCAGCAACAACAGCAACAGCAATCAACGGCGTTTGATTACTTTTGA 1356 0.5671 MVESQRDSDGEVLNSSHSSMSSESCSSLRLSFSRLSFEHSPENLTLKPHRSSDSAYEAIRSAAFSRKSGLSFRDFKLVRRIGSGDIGTVYLCRLRSSSDDDGCFYAMKVVDKETLAMKKKIQRAEMEKRILKMLDHPFLPTLYAEFEASHFSGIVMEYCSGGDLHSLKHKQPQKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSNAIPAVESPDFSPDSPSPASPPNCRTPSPFSCLFRSRKVQTLSINRLFVAEPVSAKSCSFVGTHEYVSPEVASGRSHGNGVDWWALGIFIYEMVYGATPFAGATNEATLRNIVKKPLSFPTETPASVSEMHARDLMSGLLVKDPASRLGSKRGAADVKTHPFFKGLNFALVRSLTPPEIPGLRRHKTPSFRPDSANSNKGRYHHQQQQQQQQQQQSTAFDYF* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0576 451 SMART serkin_6 75 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0576 451 SUPERFAMILY Protein kinase-like (PK-like) 72 440 IPR011009 -
Vvi10g0576 451 MobiDBLite consensus disorder prediction 1 23 - -
Vvi10g0576 451 Gene3D Transferase(Phosphotransferase) domain 1 159 226 - -
Vvi10g0576 451 Gene3D Phosphorylase Kinase; domain 1 73 158 - -
Vvi10g0576 451 FunFam protein kinase PINOID 159 227 - -
Vvi10g0576 451 Pfam Protein kinase domain 76 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0576 451 Pfam Protein kinase domain 286 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0576 451 FunFam serine/threonine-protein kinase D6PK-like 284 410 - -
Vvi10g0576 451 CDD STKc_phototropin_like 73 409 - -
Vvi10g0576 451 MobiDBLite consensus disorder prediction 420 451 - -
Vvi10g0576 451 MobiDBLite consensus disorder prediction 8 23 - -
Vvi10g0576 451 ProSiteProfiles Protein kinase domain profile. 75 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0576 451 FunFam protein kinase PINOID 2 73 158 - -
Vvi10g0576 451 PANTHER FLIPPASE KINASE 1-RELATED 18 418 - -
Vvi10g0576 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vvi10g0576 451 Gene3D Transferase(Phosphotransferase) domain 1 285 410 - -
Vvi10g0576 451 MobiDBLite consensus disorder prediction 407 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0576 Vvi-Chr10 7410409 7412334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0576 6 409 AGC Kinase Gene Family AT2G34650 69.231 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vvi10g0576 Pkinase 8.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0576 - - vvi:100254888 838.18