Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0559 ATGGAAGGCTTTGATGGTTCAGAGTATCTTTCAGGTTGGGGATTGTCAATGATAGCCGTTCAAATGGCTCTAAAAGCGGCAATGGAGCTCAATGTCTTCAACATCATTGCCAACGCAGGCCCTAATGCTCAACTCTCTTGTGTGGAAATTGTTTCCAAGATTCCTACTACCAATCCAAATGCTGCCGTGGCTTTGGATCGGATACTAAGAACGCTCACCTTCAACTCCATTCTAACAGCGTCTCTGAGGCCATGCAAGGATGGAACCACGATAAAGCAAGAAAGGACGTATGGCTTAACGCCGAAGTCGTGCAGCCTAGTGACCGACAACGTTGAAGTTTCTTCAACACCGACGGTGAATTTCTGCACGGAAAGGGTAGTTGTGGAGAGCTTCTATATGCTCAAGTACGCAGTGCTTGAGGCGGATTGTCATCCTTTCCACAAGGCTCATGGCGTAAATGTGTTCGAGTATTTGTCCAAGGATCCAAGGTTGAGCCGAGAGTTCAACGAGGCTATGACAATGAACTCCAAAATTGTATTGGACATGGTGCTAAAGGCCTATAGGGGCGGTTTTGAAGAGACGAAAGAGATTATGGATGTAGGGGGCAGCATTGGAACTTCGGTTGTGAAGTTGGTTTCTGTTTATCCACACATTCGTGGAATAAACTTCGATTTGCCTCATGTTATTGCCGATGCTCCTGAGCAGCCAGGGGTGACCCATGTGGCTGGAGATATGTTCGAGTCATTACCGAATGCAGAGACAATTTTATTGAAGTTTGTACTCCATGACTGGGGTGACGATGGGTGCAAGAAGGTGTTGAGAAATTGCTGGAAGGCATTGCCGGAAAATGGGAAGGTAATAGTTGTGGAGTATGCTATCCCTCAAGTACTGGGAAATGACCCTCCATCACTGAATGCTACGGTAGCAGACTTATACATGATGATTTTGAACACTGGTGGCAAGGAGCGCACACTTGCTGAATTTGAACATCTTGCAAAGGCTGCGGGCTTTGCCCAAACTAAGGTGTTTCCCATTGCACATGGGATTCATGTTATAGAGTTTTTAAAGAGCTGCTAG 1077 0.4624 MEGFDGSEYLSGWGLSMIAVQMALKAAMELNVFNIIANAGPNAQLSCVEIVSKIPTTNPNAAVALDRILRTLTFNSILTASLRPCKDGTTIKQERTYGLTPKSCSLVTDNVEVSSTPTVNFCTERVVVESFYMLKYAVLEADCHPFHKAHGVNVFEYLSKDPRLSREFNEAMTMNSKIVLDMVLKAYRGGFEETKEIMDVGGSIGTSVVKLVSVYPHIRGINFDLPHVIADAPEQPGVTHVAGDMFESLPNAETILLKFVLHDWGDDGCKKVLRNCWKALPENGKVIVVEYAIPQVLGNDPPSLNATVADLYMMILNTGGKERTLAEFEHLAKAAGFAQTKVFPIAHGIHVIEFLKSC* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0559 358 PIRSF O-mtase 5 356 IPR016461 GO:0008168
Vvi10g0559 358 FunFam Caffeic acid 3-O-methyltransferase 9 105 - -
Vvi10g0559 358 Pfam Dimerisation domain 22 73 IPR012967 GO:0046983
Vvi10g0559 358 PANTHER O-METHYLTRANSFERASE 17 339 IPR016461 GO:0008168
Vvi10g0559 358 SUPERFAMILY "Winged helix" DNA-binding domain 16 109 IPR036390 -
Vvi10g0559 358 Gene3D - 5 104 IPR036388 -
Vvi10g0559 358 Pfam O-methyltransferase domain 131 338 IPR001077 GO:0008171
Vvi10g0559 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 354 IPR029063 -
Vvi10g0559 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 12 356 IPR016461 GO:0008168
Vvi10g0559 358 Gene3D Vaccinia Virus protein VP39 107 356 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0559 Vvi-Chr10 7080245 7081794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0559 22 356 Monolignol Biosynthesis Gene Families AT5G54160 45.723 4.40e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0559 - - vvi:100265214 721.079