Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0552 ATGAGGTTGTCTCCTGCTGGGTTCACACACCAGACCCAGGAAGGGGAGAAGAGATGTCTGAATTCTGAACTTTGGCATGCATGTGCGGGCCCTCTTGTTTCCCTACCTGCTGTTGGAAGCAGAGTGGTTTATTTTCCACAAGGTCATAGTGAGCAGGTTGCTGCATCAACGAACAAGGAAGTGGATGCTCATATCCCTAACTATCCTAGCTTACCCCCACAACTTATCTGTCAGCTTCACAATGTGACCATGCATGCAGATGTGGAGACGGATGAAGTATATGCGCAGATGACGTTACAACCATTGAGTCCACAAGAGCAAAAGGATGCGTACCTCCCAGCAGAGTTGGGTGTGCCCAGCAAACAGCCATCGAATTATTTCTGTAAAACATTGACAGCTAGTGACACAAGTACACATGGAGGCTTCTCTGTTCCTCGCCGAGCAGCTGAAAAAGTGTTTCCTCCTTTGGACTTTTCACAGCAGCCTCCAGCCCAAGAGTTAATTGCAAGGGATCTTCATGATAATGAATGGAAATTTAGGCATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACAACAGGTTGGAGTGTATTTGTAAGTGCGAAAAGACTTGTTGCTGGGGATTCGGTTCTTTTTATCTGGAATGAGAAGAATCAGTTACTACTTGGTATCCGGCGTGCTAATCGACCACAAACTGTTATGCCATCATCGGTTTTATCAAGTGATAGCATGCACTTAGGGCTTTTGGCTGCTGCAGCTCATGCAGCTGCAACAAATAGCCGTTTCACTATATTTTATAATCCAAGGGCTAGCCCATCTGAATTTGTCATACCATTGGCCAAGTATGCTAAAGCAGTCTATCATACACGTGTTTCTGTTGGCATGCGCTTTCGGATGCTGTTTGAAACTGAAGAATCAAGTGTCCGTCGCTACATGGGCACGATAACTGGCATAAGCGATTTAGATCCTGTTCGGTGGCCAAACTCCCATTGGCGCTCAGTGAAGGTGGGCTGGGATGAGTCCACGGCAGGGGAGAGGCAACCCAGAGTGTCCCTATGGGAGATTGAACCTTTAACGACCTTCCCAATGTATCCTTCTCCATTTCCTCTCAGACTAAAGAGACCATGGCCACCAGGGCTACCCTCTCTCCATGGCATCAAGGATGATGATTTAGGAATGAATTCACCACTTATGTGGCTCCGAGGAGATAATGTAGACCGTGGAATCCAATCTCTGAACTTTCAGGGAATCGGGGTTAATCCTTGGATGCAACCAAGGCTTGACGCTTCCATGCTGGGTCTGCAGACAGACATGTACCAAGCTATGGCTGCTGCTGCTCTTCAGGAGATGAGGGCTGTGGATCCATCCAAACAGGCACCTGCACCCCTTCTGCATTACCAGCAACCCCAAAATGTTGCCAGCAGGTCTTCTTGTATAATGCAGCCCCAGATGTTGCAGCAATCTCAGCCTCAACAGGCCTTTCTTCAAGGCATACATGAAAACACCAACCAGGCTCAATCTCAGACTCAGTCTCACCTTCTTCAGCAACATTTGCAGCATCAGCACTCATTCAATAATAATAATAACAATAATAATCAGCAGCAGCAGCCCGCCCCCCCGCCGCAACAACCACAACAGCAATTGGTCGATCATCAGCGGATCCCGAGTGTTGTTTCTGCCATCTCTCAGTTTGCTTCAGCCTCTCAATCCCAGTCACCATCTTTGCAAACCATCTCTTCTCTGTGCCAACAGCAGAGCTTTTCCGACTCAACTGGTAACCCAGGGACGAGCCCAATTATTTCTCCCCTCCAGAGTCTTTTGGGTTCATTCCCCCAGGATGAGTCATCCAACCTCCTCAACATGCCTAGAAGCACTTCCCTTATGCCGTCTGCTGCCTGGCTGCCCAAGCGGGTTGCGGTTGAACCTCTTCTTCCTTCTGGTGCTTCACAATGTATTCTGCCCCAAGTGGAACAGTTGGGACAACCCCAAACAAACATCTCTCAGAATTCTATTTCACTGCCACCATTTCCTGGTAGAGAGTGCTCCATTGACCAAGAAGGGAGCACTGATCCCCAGAGCCATCTTTTGTTTGGCGTTAATATAGAGCCCTCATCTTTGCTAATGCAGAATGGGATGTCAGGTCTCAGGGGAGTTGGCAGTGAAAGTGATTCAACGGCCATACCCTTCTCTTCATCCAATTTTATGAGTTCTACAGGCACCGATTTTTCACTTAATCCAGCAATGACACCTTCCAGTTGCATTGATGAATCTGGTTTCCTGCAGTCTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGCAGCTACCATGAACTGCGTGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAGTTGGAGGACCCTCGGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCGGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGTGCAGCAGATGGGAAAACGAGGGTTAGAGCTTCTGAACTCGGTCCCCATACAAAGGCTCACTAGTAGCAGCTGTGATGACTATGCAAGCCGGCAGGACTCAAGAAATTTGAGCACTGGGATCACATCTGTGGGGTCTCTTGACTACTGA 2727 0.4815 MRLSPAGFTHQTQEGEKRCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDAYLPAELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSLHGIKDDDLGMNSPLMWLRGDNVDRGIQSLNFQGIGVNPWMQPRLDASMLGLQTDMYQAMAAAALQEMRAVDPSKQAPAPLLHYQQPQNVASRSSCIMQPQMLQQSQPQQAFLQGIHENTNQAQSQTQSHLLQQHLQHQHSFNNNNNNNNQQQQPAPPPQQPQQQLVDHQRIPSVVSAISQFASASQSQSPSLQTISSLCQQQSFSDSTGNPGTSPIISPLQSLLGSFPQDESSNLLNMPRSTSLMPSAAWLPKRVAVEPLLPSGASQCILPQVEQLGQPQTNISQNSISLPPFPGRECSIDQEGSTDPQSHLLFGVNIEPSSLLMQNGMSGLRGVGSESDSTAIPFSSSNFMSSTGTDFSLNPAMTPSSCIDESGFLQSPENVGQVNPPTRTFVKVYKSGSFGRSLDITKFSSYHELRGELARMFGLEGQLEDPRRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSLQEVQQMGKRGLELLNSVPIQRLTSSSCDDYASRQDSRNLSTGITSVGSLDY* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0552 908 ProSiteProfiles PB1 domain profile. 775 859 IPR000270 GO:0005515
Vvi10g0552 908 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 865 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi10g0552 908 SMART B3_2 127 229 IPR003340 GO:0003677
Vvi10g0552 908 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi10g0552 908 SUPERFAMILY CAD & PB1 domains 768 851 - -
Vvi10g0552 908 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vvi10g0552 908 FunFam Auxin response factor 770 864 - -
Vvi10g0552 908 MobiDBLite consensus disorder prediction 504 551 - -
Vvi10g0552 908 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vvi10g0552 908 FunFam Auxin response factor 291 363 - -
Vvi10g0552 908 Gene3D - 291 363 - -
Vvi10g0552 908 MobiDBLite consensus disorder prediction 504 537 - -
Vvi10g0552 908 FunFam Auxin response factor 125 229 - -
Vvi10g0552 908 CDD B3_DNA 126 227 IPR003340 GO:0003677
Vvi10g0552 908 Gene3D - 125 228 IPR015300 -
Vvi10g0552 908 Gene3D - 772 864 - -
Vvi10g0552 908 Pfam AUX/IAA family 769 864 IPR033389 -
Vvi10g0552 908 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0552 Vvi-Chr10 6956699 6964043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0552 1 485 B3 DNA Binding Superfamily AT1G30330 86.939 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi10g0552 AUX_IAA 8.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0552 - - vvi:100242923 1676.37