Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0546 ATGGTTGTATATTTTGTTGACATGAGGCATCCAGATCAATGTTGTAACAAAGTGGTGGTGGGCACACTGACACCTCTTTTGAGTATTATTTTATCATTCAAGAGATTGCGTTGTTATGAGGCATCCAGATCTGTGAACAACACCATGCCATCAACCGCTGCAACAGCATATCATTCATCACCATGCTTCTCTCTCCAGAGTCCATCATCCCTGCCTTCCAATTCCCACCAGCCAAACAACCCATTAACCATAAAGCCGAAGAACGTCCTCCAGAAGCACCCACTCTATACACCAGCCCATTCAAACCTCTCTCTCCAGTTCAAAGAGAAAATCCTGTGCCTTGAGATAATGGGTGTTGACTCTGGTAAGGCACTCTCTCTAAACCCTTCTCTCCACACTGCCACCCTCCATTCCATCCACTCCATCATCTCCTTCCTCCAATCGAAAGGCATTCACCAGAAGGACTTGGGCAGGATCTTTGGCATGTGCCCAAAACTCCTCACTTCTAACATCAGAACTGACCTAATCCCAGTTTTCAATTTCCTCTCACAGGACCTGAAAGTGCCTGACCAAAGCTTCAGAAGGGTCATTAACAAGTGTCCCAGACTCCTTGTTTCTAGTGTGAGGGACCAGCTTAAACCAGCTTTGATTTTTCTTCAGAGACTTGGGTTTCAGGACCTGGAGGCATTGGCTCACCAGGACCCTGTGTTGTTAGTTTCCAGTGTGGAGAAGACCTTGATACCTAAGCTGGAGTATTTGGTGAGCTTAGGAATGTCAAGGGCTGATGCAGTAGGCATGGTTCTGAGGTGTCCGGGGCTGTTTACTTTCAGTGTTGAAAACAATTTTAAGCCAAAGTTCGAATATTTTGTTGGGGAGATGGAGGGGAATTTGGAAGAGTTGAAGGAGTTCCCTCAGTATTTTGCTTTTAGTTTGGAGAAGAGGATAAAGCCTAGGCACATGGAGGCTGTGCAGAATGGGGTGAAAGTGCCTTTGGCATTGATGCTTAAAAGCACTGATGAAGAGTTTAGGGAGTTGATGACAAGGCATGGGAGTGGATGA 1059 0.4599 MVVYFVDMRHPDQCCNKVVVGTLTPLLSIILSFKRLRCYEASRSVNNTMPSTAATAYHSSPCFSLQSPSSLPSNSHQPNNPLTIKPKNVLQKHPLYTPAHSNLSLQFKEKILCLEIMGVDSGKALSLNPSLHTATLHSIHSIISFLQSKGIHQKDLGRIFGMCPKLLTSNIRTDLIPVFNFLSQDLKVPDQSFRRVINKCPRLLVSSVRDQLKPALIFLQRLGFQDLEALAHQDPVLLVSSVEKTLIPKLEYLVSLGMSRADAVGMVLRCPGLFTFSVENNFKPKFEYFVGEMEGNLEELKEFPQYFAFSLEKRIKPRHMEAVQNGVKVPLALMLKSTDEEFRELMTRHGSG* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0546 352 Pfam mTERF 231 342 IPR003690 GO:0003690|GO:0006355
Vvi10g0546 352 Pfam mTERF 137 228 IPR003690 GO:0003690|GO:0006355
Vvi10g0546 352 PANTHER CGI-12 PROTEIN-RELATED 57 345 IPR003690 GO:0003690|GO:0006355
Vvi10g0546 352 Gene3D Transcription termination factor 3, mitochondrial 184 349 IPR038538 -
Vvi10g0546 352 FunFam Transcription termination factor MTEF1, chloroplastic 182 350 - -
Vvi10g0546 352 SMART mt_12 122 152 IPR003690 GO:0003690|GO:0006355
Vvi10g0546 352 SMART mt_12 297 328 IPR003690 GO:0003690|GO:0006355
Vvi10g0546 352 SMART mt_12 194 225 IPR003690 GO:0003690|GO:0006355
Vvi10g0546 352 SMART mt_12 157 189 IPR003690 GO:0003690|GO:0006355
Vvi10g0546 352 SMART mt_12 264 296 IPR003690 GO:0003690|GO:0006355
Vvi10g0546 352 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0546 Vvi-Chr10 6867305 6869293 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi10g0546 mTERF 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0546 K15032 - vvi:100853685 577.015