Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0544 ATGGCGTCACGGTCAAGTACTGGCAGGACACGTGTGGGGAAGTATGAATTGGGTCGAACCCTAGGGGAAGGGACGTTTGCAAAGGTCAAGTTTGCGAGGAATGTGGAGACTGGGGAGAATGTTGCTATTAAGATTCTCGACAAAGAAAAGGTTCTTAAGCATAAGATGATCGGTCAGATTAAAAGGGAAATTTCAACCATGAAACTGATCAGACATCCAAATGTCATTCGAATGCATGAGGTGATGGCTAGCAAGACAAAGATATACATTGTTTTGGAATTTGTGACTGGTGGTGAACTTTTTGACAAAATTGCTAGTAAAGGAAGGTTGAAAGAAGATGAAGCAAGAAAGTATTTCCAACAGCTAATTAACGCTGTGGATTACTGCCATAGTAGATGTGTTTTCCATAGAGACCTAAAGCCGGAGAATCTATTGCTTGATGCTAATGGAGTTCTTAAAGTTTCAGATTTTGGATTGAGTGCACTACCTCAACAAGTTCGAGAAGATGGGTTACTTCACACAACATGTGGAACTCCAAACTATGTTGCTCCAGAGGTGATCAATAACAAAGGCTATGATGGAGCTAAGGCAGACCTATGGTCATGTGGGATATTCAAGGCCGACTTTACGTTTCCTCCCTGGTTATCCTCAAGTGCAAAGAAGCTAATTAAAAGAATCTTGGACCCTAACCCGGAGACGAGGATTACAATTGCTGAAGTCATTGAGAATGAGTGGTTTAAGAAGGGATATAAGCCACCTAGTTTCGAACAAGCAGATGTTAGTCTTGATGATGTGGACGCCATCTTTGATGAATCAGGGGACTCTCAAAACCTTGTTGTGGAGAGGCGTGAAGAGCGACCTACGACGCCTGTCACTTTGAATGCTTTTGAACTCATCTCTACATCTCAGGGTCTCAACCTCGGTACTCTCTTTGAAAAGCCAATGGGCCTTGTTAAACGGGAGACAAGATTCACATCGAAGCGTCCTGCCAATGAGATTATCTCAAAAATTGAGGAAACTGCTATGCCTTTGGGGTTTGATGTAAAGAAAAATAACTTCAAGATGAAACTTCAAGGGGAGAAAACTGGACGCAAGGGTCATTTATCCATTGCAACAGAGATTTTTGAGGTGGCCCCTTCGCTATACATGGTTGAGCTTCGAAAATCTGGGGGAGATACTTTGGAATTTCACAAGTTCTACAAGAACCTCTCAACTGGGTTGAAAGATATTGTTTGGAAATCAGGAGATGAATCAAAGGAGGAAGTGAATAATGGGTCTGGTGTGGCATCAACTTGA 1296 0.4236 MASRSSTGRTRVGKYELGRTLGEGTFAKVKFARNVETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMHEVMASKTKIYIVLEFVTGGELFDKIASKGRLKEDEARKYFQQLINAVDYCHSRCVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGIFKADFTFPPWLSSSAKKLIKRILDPNPETRITIAEVIENEWFKKGYKPPSFEQADVSLDDVDAIFDESGDSQNLVVERREERPTTPVTLNAFELISTSQGLNLGTLFEKPMGLVKRETRFTSKRPANEIISKIEETAMPLGFDVKKNNFKMKLQGEKTGRKGHLSIATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDIVWKSGDESKEEVNNGSGVAST* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0544 431 ProSiteProfiles NAF domain profile. 288 312 IPR018451 GO:0007165
Vvi10g0544 431 Pfam NAF domain 290 350 IPR004041 GO:0007165
Vvi10g0544 431 FunFam Maternal embryonic leucine zipper kinase 10 209 - -
Vvi10g0544 431 CDD CIPK_C 294 409 - -
Vvi10g0544 431 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 402 - -
Vvi10g0544 431 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vvi10g0544 431 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Vvi10g0544 431 ProSiteProfiles Protein kinase domain profile. 15 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0544 431 Gene3D Kinase associated domain 1, KA1 293 413 - -
Vvi10g0544 431 SUPERFAMILY Protein kinase-like (PK-like) 12 260 IPR011009 -
Vvi10g0544 431 FunFam Non-specific serine/threonine protein kinase 287 413 - -
Vvi10g0544 431 Gene3D Transferase(Phosphotransferase) domain 1 7 292 - -
Vvi10g0544 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vvi10g0544 431 SMART serkin_6 15 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0544 431 Pfam Protein kinase domain 15 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0544 Vvi-Chr10 6828425 6837874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0544 82 428 CBL-interacting serine-threonine protein kinases AT1G30270 79.515 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi10g0544 Pkinase 1.2e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0544 - - vvi:100253180 835.869