Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0543 ATGAAGGAAGCAAAGCAGAAGAAGAACGTTCCTGTCCTCCCATGGATGAGAAGCCCTATTGATGTCAGTCTCTTCGAAGAGTGTCCTCTCCATCTCTTTCCATGTCTCGACCCCAGGTTGGAGGTGGCTTTGAAGAACATGGGCTTCTCATCACTCTTTCCAGTGCAGGTTGCAGTTTGGCAAGAGACAGTTGGACCTGGTGCTTTTGAGCGAGACCTTTGTATAAACTCACCAACCGGAAGTGGGAAAACTTTAGCTTATGCTTTGCCAATAGTGAACGTGCTGTCAAGTCGTGCTGTTAAGTGTCTACGTGCCTTAGTGGTGTTGCCTACTCGTGATTTGGCGTTGCAGGTTAAAGAAGTTTTTGCTGCTATTGCACCTGCAGTGGGCTTATCCGTTGGCCTGGCAGTTGGTCAAACTTCAATTGCTGATGAAATTTCAGAACTTATTAAAAGACCTAAGCTTGAGGCAGGGATCTGTTATGACCCAGAAGATATTTCACTGGAATTACAAAGTTCAGTAGACATATTGGTGGCAACACCTGGAAGGCTGATGGACCATATCAATACCACTAAGGGTTTTACACTTAAGCATCTTCGTTATCTTGTTGTTGATGAAACAGATAGATTACTCAGGGAGGCATATCAGTCCTGGCTACCTACCGTTCTCCAGTTGACTCGCTCTAGTGATGAAAGCCTGTTCCCTTGTGGCAAGACCATTCTTCCTTCTACATTTGGTTCCATGAACACCATAAGGAGATGTGGTGTTGAAAGGGGGTTTAAGGGTAGATCTTACCCTAGGCTTGTGAAAATCGTACTATCTGCCACACTAACTCAAGATCCAAGCAAGCTTGCTCTGCTTGATCTGCATCATCCTTTGCTTTTGACGGCAGGGCAAAGGCGTTATCAGCTCCCAGAAAAACTAAAATCTTTTAAGCTGATTTGTGAATCTAAACTTAAACCCCTGTATTTGGTTGCCCTTCTAAGGGATTTAGGAGGGGAGAAATGCATTGTTTTCACATCATCTGTAGAGTCAGCTCATCGGCTATGTACCTTACTGAATTTTTTTGGTGATTTGCAAATCAAGATTGGGGAGTATTCAGGTCTTCAACATCAACGTGTGAGAAGCAAGACTTTGGAGGAGTTCCGTGGAGGGAAAATACAAGTACTGATTTCCTCTGATGGAATGACCCGTGGAATGGATGTCGAAGGGGTGAGAAATGTTATTAATTATGATGTGCCTAAATTTATCAAGACGTATATACATCGGGCTGGTCGGACTGCAAGAGCAGGCCAGACTGGTCGTTGCTTCACACTACTGCGTAAAGATGAGGATAAGCGTTTCAAGCAGCTGTTGCAGAAAGCTGACAGCGACTCATGTCCTGTTCACTCTGTTGCTTCAAATTCAATTGAGGCACTTCACTCTGTTTACGTTTCTGCATTGGAGAAACTGAAAGAGACAGTTGTATCAGAAACAACCAGGAAGCGCAAAATCAATTTCAAGTCTTCAGGAGCAGATAAAAGAAAACAAGAAAAGCACTTGAAGGAATAG 1551 0.4384 MKEAKQKKNVPVLPWMRSPIDVSLFEECPLHLFPCLDPRLEVALKNMGFSSLFPVQVAVWQETVGPGAFERDLCINSPTGSGKTLAYALPIVNVLSSRAVKCLRALVVLPTRDLALQVKEVFAAIAPAVGLSVGLAVGQTSIADEISELIKRPKLEAGICYDPEDISLELQSSVDILVATPGRLMDHINTTKGFTLKHLRYLVVDETDRLLREAYQSWLPTVLQLTRSSDESLFPCGKTILPSTFGSMNTIRRCGVERGFKGRSYPRLVKIVLSATLTQDPSKLALLDLHHPLLLTAGQRRYQLPEKLKSFKLICESKLKPLYLVALLRDLGGEKCIVFTSSVESAHRLCTLLNFFGDLQIKIGEYSGLQHQRVRSKTLEEFRGGKIQVLISSDGMTRGMDVEGVRNVINYDVPKFIKTYIHRAGRTARAGQTGRCFTLLRKDEDKRFKQLLQKADSDSCPVHSVASNSIEALHSVYVSALEKLKETVVSETTRKRKINFKSSGADKRKQEKHLKE* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0543 516 FunFam ATP-dependent RNA helicase DDX51 17 298 - -
Vvi10g0543 516 CDD DEADc_DDX51 43 283 - -
Vvi10g0543 516 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Vvi10g0543 516 Pfam DEAD/DEAH box helicase 54 284 IPR011545 GO:0003676|GO:0005524
Vvi10g0543 516 PANTHER RNA HELICASE 24 483 - -
Vvi10g0543 516 MobiDBLite consensus disorder prediction 495 516 - -
Vvi10g0543 516 SMART helicmild6 350 431 IPR001650 -
Vvi10g0543 516 Gene3D - 2 298 IPR027417 -
Vvi10g0543 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 295 IPR014001 -
Vvi10g0543 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 471 IPR001650 -
Vvi10g0543 516 SMART ultradead3 48 311 IPR014001 -
Vvi10g0543 516 Gene3D - 307 516 IPR027417 -
Vvi10g0543 516 CDD SF2_C_DEAD 308 440 - -
Vvi10g0543 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 452 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0543 Vvi-Chr10 6777469 6791484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0543 58 446 Eukaryotic Initiation Factors Gene Family AT3G13920 24.359 6.13e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0543 K14807 - vvi:100258315 1009.59