Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0539 ATGGGAAGACAGAAGATCGAAATCAAAAAAATTGAGAAGAAAAGTTCCTTGGAGGTCACCTTCTCCAAGCGTCGAACAGGACTCTTCAAGAAGGCCGGCGAGCTCTGCGTTTTGTGCGGTGCTGAGGCCGCCGTCATCGTCTTCTCTCCGGGCAGGAGGGCCTTCGTCTTCGGCCACCCCTCTGCGGACGCTGTCATCGATCGCTTCCTCCATCGCGAGACCAACTCTCGTGCGCTTGTTCCGGCGGGACAGGTGCACGGACACGTTCAGAGGCAATACTTGGAGGCTCTTGGAAGGCTGGAGGTGAAGAAGGAGCAAGAAGAGACGGTGGGGGGAGATGGGGAGGGTGGGTTTTGGTGGGACGCGCCCATTGAGAACATGGGGTTGAATGAACTGGAGCAGTTCAGGGGTTCCCTTGAGGAGCTGAGGAAGAAGGTGGCGGATCGAGTGGAGGAGATGACCATGATGATGATGATGGAGAGCGGTCCTTCTTCGACTGCCATGGTTGAATATGCAGCGCCACCGCAGGAGTATAATTCTTCTGGTGGTGTTCTGCATGGCCATGATTTGGCTGCACAGGGTGTTCCTCATGGTTTCGATTTTGGGTTCGGTTTCGACGAACACCTTTTCTGA 633 0.5513 MGRQKIEIKKIEKKSSLEVTFSKRRTGLFKKAGELCVLCGAEAAVIVFSPGRRAFVFGHPSADAVIDRFLHRETNSRALVPAGQVHGHVQRQYLEALGRLEVKKEQEETVGGDGEGGFWWDAPIENMGLNELEQFRGSLEELRKKVADRVEEMTMMMMMESGPSSTAMVEYAAPPQEYNSSGGVLHGHDLAAQGVPHGFDFGFGFDEHLF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0539 210 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Vvi10g0539 210 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Vvi10g0539 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi10g0539 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi10g0539 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi10g0539 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi10g0539 210 Coils Coil 132 152 - -
Vvi10g0539 210 PANTHER MADS BOX PROTEIN 3 148 - -
Vvi10g0539 210 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Vvi10g0539 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi10g0539 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0539 Vvi-Chr10 6733116 6733748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0539 2 147 Type I MADS-box Gene Family AT5G60440 44.512 2.53e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi10g0539 SRF-TF 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0539 - - vvi:100251432 385.956