Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0534 ATGGCTGCACGTTTTGCTTCCAGATTGTCTCATGTGGGCCGATCAGTGTTTGGGGGGCTTGGCAACATCTCTTCTGGTTCACTGAGAACATCACTTGATAGCACATGGAACAATTTCTTGTCTCAGCAGCAGCAAAGGACTTTCATACAGATGAGGACCGTTCTCAAAGTTGTGGACAACTCGGGGGCAAAAAAGGTGATGTGCATACAAGCTTTGAAGGGGAAGAAAGGAGCAAGACTGGGCGATACAATAGTTGCATCAGTGAAGGAAGCTCACCCTAATGGAAAAGTGAAGAAAGGAGAAGTTGTATATGGTGTGGTTGTGCGTGCTGCCATGCAACGTGGCAGATGCGATGGTAGTGAGGTCAAGTTTGATGACAATGCTGTTGTACTTCTTGATAAGCAAGGCCAGCCAAGAGGGACTAGAGTATTTGGGCCAGTACCCCATGAACTAAGGAAGAAAAAGCACCTTAAGATTCTAACCCTCGCAGAGCATATTGCTTAA 504 0.4643 MAARFASRLSHVGRSVFGGLGNISSGSLRTSLDSTWNNFLSQQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGEVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLLDKQGQPRGTRVFGPVPHELRKKKHLKILTLAEHIA* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0534 167 Pfam Ribosomal protein L14p/L23e 49 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi10g0534 167 SMART Ribosomal_L14_2 48 167 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi10g0534 167 Hamap 50S ribosomal protein L14 [rplN]. 48 167 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi10g0534 167 FunFam 50S ribosomal protein HLP, mitochondrial-like 48 167 - -
Vvi10g0534 167 ProSitePatterns Ribosomal protein L14 signature. 105 131 IPR019972 -
Vvi10g0534 167 NCBIfam 50S ribosomal protein L14 49 166 IPR005745 GO:0003735|GO:0006412|GO:0015934
Vvi10g0534 167 SUPERFAMILY Ribosomal protein L14 49 166 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vvi10g0534 167 Gene3D Ribosomal protein L14 48 167 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vvi10g0534 167 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 49 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0534 Vvi-Chr10 6684202 6693834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0534 49 150 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 32.110 3.66e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0534 K02874 - vvi:100241180 311.997