Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0533 ATGGAGGTGGATGAGATTCAGACGCAGGCGTGTAAGTTTTCCAGGGTTGGTAATGGTAGAAATGATTTAACCAAGATAGGTCAAAAGGGGGGAGATCAATACCCAGATGACGAGGAAGATGGAGAAATTAAAAGGGGAGGTGGTGGAGGAAGCGATGGTGGTCGCCTTCGCGCTTGGCACCACTCTCGGATTTTTAGGGTATCTCGAGCTTCCGGCGGCAAGGATAGGCATAGTAAGGTTTTGACGTCCAAAGGGCTAAGGGACCGGCGTGTTCGGCTTTCAGTCACCACCGCGATACAATTCTATGATCTTCAAGATCGGTTGGGTTATGATCAGCCCAGTAAAGCTGTGGAGTGGTTGATTAAAGCAGCTTCAGATGCTATTGCCGAGCTCCCTTCGCTGAATAGTTCATTTCCTGATACACCGAAGCAACTGAGCGATGAAAAAAGACCGAGCCCTGGCACTGAACAAGGGTTTGATTCGGTGGACTTAGAAGGCGAGCACAATTATCAGCATCAGCATCCCCAACAGCATATTTCTTTGTCGAAATCTGCTTGTAGTAGCACTTCAGAGACGAGCAAGGGCTCAGGGTTGTCTCTCTCGCGATCTGAGATCCGCGTTAACCGTGTGAAAGCCCGTGAACGAGCAAGGGAGAGAGCAGCAAAGGAGAAGGAGAAGGAGAAAGAAAATGAATCCCGTGCTGCCCACCCTCACAATGTGAACAACCCTATTCCCCAAAGCTCGTCTTTCACAGAACTACTCACTGGGGGTATTGGCTGTGCTAGCAATAACGCGACTTCAGTTCAGCACAACCCCAGTGGCGAGCCCAATTTGTTTCACAAGATGACAAGACAGTGGACTTCCACTATGGATTACATTGGCCCGGGATTTCTCGGGTCATCCTCGTCCCGGACCAATCACTCGTCAGGATTTGCTGGACAAATCCACTTGGGAAATTCACTGCCGCAATCGCCGTTCAATGTGGCTGGCGATCATCATCCGGAGCTGCAGCATTTTTCTTTTGTTCCCGACCATCTTATCCCGGTGGCGACTTCGCAACCCGGTGGTAGTGACAACAACCTCAACTTTACAATCTCTTCCGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTGTTGCCTCACCTTCAGAGGTTTTCTCCTATAGACGGATCAAATCTACCTTTCTTCATGGGCGCTGCTCCTGTGGAGAATCATCACCACCATCATCAATTTCCACCTGGATTTGATGGCTGCTTGCAACTCTACTATGGCGACGGAAGCAGGCATTCAGACCAGAAGGGAAAAGGAAAGAACTAA 1335 0.4981 MEVDEIQTQACKFSRVGNGRNDLTKIGQKGGDQYPDDEEDGEIKRGGGGGSDGGRLRAWHHSRIFRVSRASGGKDRHSKVLTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSLNSSFPDTPKQLSDEKRPSPGTEQGFDSVDLEGEHNYQHQHPQQHISLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARERAAKEKEKEKENESRAAHPHNVNNPIPQSSSFTELLTGGIGCASNNATSVQHNPSGEPNLFHKMTRQWTSTMDYIGPGFLGSSSSRTNHSSGFAGQIHLGNSLPQSPFNVAGDHHPELQHFSFVPDHLIPVATSQPGGSDNNLNFTISSGLAGFNRGTLQSNSPSLLPHLQRFSPIDGSNLPFFMGAAPVENHHHHHQFPPGFDGCLQLYYGDGSRHSDQKGKGKN* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0533 444 MobiDBLite consensus disorder prediction 31 46 - -
Vvi10g0533 444 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 55 370 IPR005333 GO:0003700
Vvi10g0533 444 MobiDBLite consensus disorder prediction 236 250 - -
Vvi10g0533 444 Pfam TCP family transcription factor 72 226 IPR017887 -
Vvi10g0533 444 ProSiteProfiles R domain profile. 206 224 IPR017888 -
Vvi10g0533 444 MobiDBLite consensus disorder prediction 206 235 - -
Vvi10g0533 444 MobiDBLite consensus disorder prediction 173 203 - -
Vvi10g0533 444 ProSiteProfiles TCP domain profile. 73 131 IPR017887 -
Vvi10g0533 444 MobiDBLite consensus disorder prediction 133 250 - -
Vvi10g0533 444 Coils Coil 210 233 - -
Vvi10g0533 444 MobiDBLite consensus disorder prediction 17 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0533 Vvi-Chr10 6666048 6667382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0533 55 444 TCP Transcription Factor Family AT4G18390 46.778 3.08e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi10g0533 TCP 6.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0533 - - vvi:100249845 826.624