Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0522 ATGGAGTTTACCCCCAATCTAAGAAAGCAAAACAACTTCCCCTCTGCCCTTCAAGAATCAATCAAGATGGAGAGTAACAAGCCCATGAATCTGGAACTTCCACTGTTTCCCTCCACTGCTCACACTTCTTCAATTCCCACTATGAGAGGAGGAGGAGGAGGAGGAGGAAGCCCCCAAGAGCAACAGCAACGGCAGCAGCTTACCATCTTCTACAACGGAAGGATTTGCGTTTCTGATGTTACAGAGCTTCGGGCTAGAGCAATTATACTGGCTGCAAGTAGAGAAATGGAGGAAAGGAAGAGAGCCCCGCTGTCGCCATCCATGCAATCTCAGCTCTGTGGCCCTTCGGGTGTTTCAATGAAGAGATCGCTCCATCGGTTCCTTCAGAAGCGAAAGAATAGGAGGGAAGCTATGTCCCCATACAATCATTAA 432 0.4861 MEFTPNLRKQNNFPSALQESIKMESNKPMNLELPLFPSTAHTSSIPTMRGGGGGGGSPQEQQQRQQLTIFYNGRICVSDVTELRARAIILAASREMEERKRAPLSPSMQSQLCGPSGVSMKRSLHRFLQKRKNRREAMSPYNH* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0522 143 ProSiteProfiles Tify domain profile. 60 94 IPR010399 -
Vvi10g0522 143 Pfam tify domain 61 93 IPR010399 -
Vvi10g0522 143 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 28 142 IPR040390 -
Vvi10g0522 143 MobiDBLite consensus disorder prediction 96 143 - -
Vvi10g0522 143 Pfam Jas motif 121 141 IPR018467 -
Vvi10g0522 143 SMART tify_2 60 94 IPR010399 -
Vvi10g0522 143 MobiDBLite consensus disorder prediction 37 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0522 Vvi-Chr10 6481641 6482423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0522 30 142 Tify Gene Family AT1G30135 45.082 3.23e-22 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vvi10g0522 tify 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0522 - - vvi:100256656 261.151