Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0519 ATGAAGAGAAGGAACTGCAATTTGGAGCTTCGGCTTCTTCCCCCCAACACTGATTATTCAAGCCCCCAGCACCACCACAACATGATGATGGAGACGGGAAGAGGAAGCCCACAGGAGCAACAACAACAGCAGCAGCTTACCATTTTCTATAACGGAAGGATCTGCGTTTGTGATGTTACAGAGCTTCAGGCTAGAGCCATCTTACTGCTTGCAAGTAGAGAAATGGAGGAAAAAACAAGAACCCCGACTGCCTCAGACGCGACCTCGCCATCTCTGCATTCTCAGCTGTATAGCGCTACTGGCCTTTCCATGAAGAGATCGCTGCAACGCTTCCTCCAGAAGCGAAAGAATAGGATGGAAGCAACCTCCCCCTACCATCGCTAG 384 0.5026 MKRRNCNLELRLLPPNTDYSSPQHHHNMMMETGRGSPQEQQQQQQLTIFYNGRICVCDVTELQARAILLLASREMEEKTRTPTASDATSPSLHSQLYSATGLSMKRSLQRFLQKRKNRMEATSPYHR* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0519 127 Pfam Jas motif 105 125 IPR018467 -
Vvi10g0519 127 SMART tify_2 39 73 IPR010399 -
Vvi10g0519 127 MobiDBLite consensus disorder prediction 14 43 - -
Vvi10g0519 127 ProSiteProfiles Tify domain profile. 39 73 IPR010399 -
Vvi10g0519 127 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 23 125 IPR040390 -
Vvi10g0519 127 MobiDBLite consensus disorder prediction 12 43 - -
Vvi10g0519 127 Pfam tify domain 40 72 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0519 Vvi-Chr10 6456090 6457038 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0519 3 126 Tify Gene Family AT1G30135 48.438 2.24e-31 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vvi10g0519 tify 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0519 - - vvi:100249695 244.588