Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0505 ATGGAAAGCAAAAGAGAGAGGGCCCTTGCTTGTGTGCTCTTACTTGGAGCCACTTACTATGGGACTGCTGTGGATTTATGGAGCACTGGTTGTATACTGGCTGAACTATATGCTGGCAAGCCTATAATGCCAGGAAGAACAGAGGTGGAACAGTTGCATAAAATTTTCAAGCTTTGTGGCTCTCCATCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACCATATTTAAGCCCCAACAGCCTTATAGGCGTTGTGTTGCAGAAACATTTAAAGACTTTCCTACACCTGCATTAGGGCCTATGGAAACACTTCTTTCCATAGATCCTGCTGATCGTGGATCTCCAGCCTCTGCTCTTAAAAGTGAGTTCTTTACAGTAAAGCCACTTCCTTGTGATCCTTCAAGCTTGCCTAAGTATCCTCACAGCAAAGAGTTTGATGCAAAAGTACGAGATGAAGAAGCTAGAAGTTCAGGGGATATAGATCTTTGCTTTGCCAATGAGGATGAAACAAGAGAGCTGTTAAGAGATGACGAAAATGCTAGTCCTGAGGTTGCTCTTGAATTTCTTGCTAAGCACTGCCAATGGGCAGTGGTGACACTAGGTTCTAATAGATGCCTTGGAAAATGCGGAAGAGAGATGTGCCCTGTGGAGAATTAG 663 0.4374 MESKRERALACVLLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPTPALGPMETLLSIDPADRGSPASALKSEFFTVKPLPCDPSSLPKYPHSKEFDAKVRDEEARSSGDIDLCFANEDETRELLRDDENASPEVALEFLAKHCQWAVVTLGSNRCLGKCGREMCPVEN* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0505 220 FunFam - 15 163 - -
Vvi10g0505 220 SUPERFAMILY Ribokinase-like 127 212 IPR029056 -
Vvi10g0505 220 ProSiteProfiles Protein kinase domain profile. 1 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0505 220 SUPERFAMILY Protein kinase-like (PK-like) 13 133 IPR011009 -
Vvi10g0505 220 Pfam Protein kinase domain 15 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0505 220 Gene3D Transferase(Phosphotransferase) domain 1 13 126 - -
Vvi10g0505 220 Gene3D - 127 220 IPR029056 -
Vvi10g0505 220 PANTHER CELL DIVISION PROTEIN KINASE 13 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0505 Vvi-Chr10 6096911 6105259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0505 13 159 Core Cell Cycle Gene Families AT5G10270 52.027 1.28e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi10g0505 Pkinase 1.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0505 - - vvi:104879163 299.671