Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0500 ATGGTGGCTCAGTGTTTAGGAGCCATTTGCGATGTTGGGTTTGTGAAAGCCTTCATGAAATCCTTCTACAATTCACTTGGTGGTGGCGCCAACTCCGTTGTTGTCTACTACTCCAAAGACACAGCTCTTGGTGTTGAAATAACACTTTCGTGCTCATGTACACTTTTCGCTCAGCCTCTAACCCTAAGAGAAGCGTCAGAGACTCCCATGTCCCTGTTTTGGCTCCACTGCCCATTGGGTTTGCTGTCTTCATGGACCATCATGCCCACCAACCACAATCAACTTAGTTCAACCGTTAACCCATTTTTAGTTCATTTCTTACCACCTTCTCACAAGCATGCATGGCCACCTTCTTAA 357 0.4622 MVAQCLGAICDVGFVKAFMKSFYNSLGGGANSVVVYYSKDTALGVEITLSCSCTLFAQPLTLREASETPMSLFWLHCPLGLLSSWTIMPTNHNQLSSTVNPFLVHFLPPSHKHAWPPS* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0500 118 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 49 IPR034294 -
Vvi10g0500 118 Pfam Major intrinsic protein 1 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g0500 118 Gene3D Glycerol uptake facilitator protein. 1 103 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0500 Vvi-Chr10 6024746 6025102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0500 1 68 Major Intrinsic Protein MIP AT4G35100 58.571 1.61e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0500 K09872 - vvi:100233027 80.1073