Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0492 ATGGCAGACGAGCCTTTTCTCACTCGCTGGTCCTTTCAGGATTTTAAGATGTTTTATGATGTCAAGTTTGGGAGAAAGAAGGAGCCCGAGAAGCACGATGCGGCAGAGAGTTCTGGTAAACCTGTGTCAAATGGGAATTCTTCAAATGGGACAGCTAATGGGGGTGGACATGTAAAAAACACATCTGACCTGGCCATTTATGAGCAGTATCGGACTCAGGAACGGGGATCAGCCAACGGCAATGGGGTTCTGTCAGATAGATATGATGAGAAACCGCAGAAGTCTCTTCTTCCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGGGAGAGTTTAAGTAGGGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGACAGCATCAAGGGTTTAGAGAATGCCAAACGTCTGCTTAAAGAAGCAGTTGTCATGCCAATAAAGTATCCCAAGTACTTTACTGGTCTTCTATCACCATGGAAAGGTATTCTCCTTTTTGGTCCTCCAGGAACAGGAAAGACTATGCTTGCAAAGGCTGTCGCAACCGAGTGCAAAACCACATTTTTCAATATTTCTGCATCCTCTGTTGTCAGCAAATGGCGAGGTGATTCAGAGAAGTTAGTGAAAGTGTTATTTGAGCTTGCTAGGCACCATGCCCCTTCAACTATATTTCTTGATGAAATTGATGCGCTTATCAGTCAACGTGGTGAAGGACGCAGTGAGCATGAAGCAAGTAGACGGTTGAAAACGGAACTACTCGTACAGATGGATGGTTTGACAAAGACAGATGAGCTTGTTTTTGTTTTAGCAGCAACAAATCTCCCATGGGAATTGGATGCAGCGATGCTCCGTCGCCTTGAAAAGAGAATCCTTGTACCCCTTCCGGAACCAGAAGCAAGAAGAGCCATGTTTGAGGAGCTCCTGCCATCAGTACCAGGTGAGGAGAAGCTTCCATATGATTTGATGGTGGAGAGGACTGAAGGTTATTCAGGTTCAGATATTCGGTTGTTGTGCAAAGAGGCAGCCATGCAGCCTCTGAGACGGTTAATGGCACATCTTGAAGATAAAGCAGAAGTGGTTCCAGAAGAAGAGCTGCCGAAGGTGGGACCAATCAAACATGATGACATAGAGACGGCTTTGAAGAACACAAGACCATCTGCTCATCTCCATGTCCACCGTTATGATAAGTTCAACACTGATTATGGCAGTCAAATACTCCAATGA 1221 0.4554 MADEPFLTRWSFQDFKMFYDVKFGRKKEPEKHDAAESSGKPVSNGNSSNGTANGGGHVKNTSDLAIYEQYRTQERGSANGNGVLSDRYDEKPQKSLLPSFESADMRALGESLSRDIIRGSPDVKWDSIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDALISQRGEGRSEHEASRRLKTELLVQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFEELLPSVPGEEKLPYDLMVERTEGYSGSDIRLLCKEAAMQPLRRLMAHLEDKAEVVPEEELPKVGPIKHDDIETALKNTRPSAHLHVHRYDKFNTDYGSQILQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0492 406 CDD RecA-like_VPS4-like 128 291 - -
Vvi10g0492 406 Gene3D - 121 396 IPR027417 -
Vvi10g0492 406 Gene3D - 294 382 - -
Vvi10g0492 406 Pfam ATPase family associated with various cellular activities (AAA) 162 292 IPR003959 GO:0005524|GO:0016887
Vvi10g0492 406 FunFam Katanin p60 ATPase-containing subunit A-like 2 294 382 - -
Vvi10g0492 406 FunFam Katanin p60 ATPase-containing subunit A-like 2 121 305 - -
Vvi10g0492 406 MobiDBLite consensus disorder prediction 39 58 - -
Vvi10g0492 406 SMART AAA_5 158 295 IPR003593 GO:0016887
Vvi10g0492 406 MobiDBLite consensus disorder prediction 26 59 - -
Vvi10g0492 406 PANTHER AAA DOMAIN-CONTAINING 44 402 - -
Vvi10g0492 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 388 IPR027417 -
Vvi10g0492 406 Pfam AAA+ lid domain 322 355 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0492 Vvi-Chr10 5887653 5907499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0492 156 365 Calmodulin-binding Proteins AT3G56690 36.239 3.00e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0492 K07767 - vvi:100253260 805.823