Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0488 ATGGGAGGGTGTTGTTGCTGTTCTTCTAAGAGAACTGAACTGAATGGCACACCAGCATACTATCACTGCCTAGGAGCATCAGAAGAACATGAACTCTTATCATCTCGTCATGGAGCAGCCTCTACGCTCTCTACAGGGCTCTTGGTTGATACAAATCTGGGAATATCACCTCCTGACACTTATAGACCACCCCCTGCACCAATTCCATATGATGTGGATTTAGGACATCCTCAAACTCCACCAGCTGCTGAAAATGGCTTCAATGGAAATCTTGAACAAATTCTGCCGTATTGGGCAACTGCCACTGTAGGCAGCGGGTTTCAGGTGATCTACAATGAGTCTGGTGACATATACCTCATAGAGAACAACGGGAGAAAACTCAGTGATGTGCTATCAAATAAGGAACTAACAGAAGAACTCTATCAGAGGGCAATTCTTGAATATGATGGAGTTTTCAGGCAGTATGTCCACCCGAAGTCTGTTGGCTCGGGTGCTCCTATAGCCTGGTCCCCTTTATCTATATTCATACCTGAAAATATTTGCACAAATATTATCGCGAGTATAGGCAGTGGAGATTGCGGGTTCAAGAGCTACTGCACACTAGGAAATGATCAGAGACCTATTTGCAAGTGCCCTCCTAGTTACATCTTTTTGGATCCACACAATGAAAAAAGCTTGCTTGGGGAGATTGTGAACTATATGGCTGTTGATGTTCAGAGAGCAGGGGACTACTCTTGGTATCTTCATGACATTTGGATGCTTCCTCTGCAAATAATTCTTGTCCTTGCGATTCTATATAAAAATGATGGAATTGCTTCTGTTGCCACGTTCATTGCCACCATTATATCGATTGTTGTTACTGTTCCACTTGCAAAAATGCAAGAAGATTATCAGGACAAACTAATGGCTGCCAAGGATGATAGGATGAGGAAGACTTCAGAGTGCCTGAGGAACATGAGGATTCTCAAGTTGCATGCTTGGGAGGACAGGTATCGAATGAAGCTGGAGGAAACGCGTCATGTGGAGTTCCAATGGCTCCGGAGAGCTCTCTAG 1053 0.4425 MGGCCCCSSKRTELNGTPAYYHCLGASEEHELLSSRHGAASTLSTGLLVDTNLGISPPDTYRPPPAPIPYDVDLGHPQTPPAAENGFNGNLEQILPYWATATVGSGFQVIYNESGDIYLIENNGRKLSDVLSNKELTEELYQRAILEYDGVFRQYVHPKSVGSGAPIAWSPLSIFIPENICTNIIASIGSGDCGFKSYCTLGNDQRPICKCPPSYIFLDPHNEKSLLGEIVNYMAVDVQRAGDYSWYLHDIWMLPLQIILVLAILYKNDGIASVATFIATIISIVVTVPLAKMQEDYQDKLMAAKDDRMRKTSECLRNMRILKLHAWEDRYRMKLEETRHVEFQWLRRAL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0488 350 Gene3D ABC transporter type 1, transmembrane domain 214 350 IPR036640 GO:0005524|GO:0016020
Vvi10g0488 350 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 224 349 - -
Vvi10g0488 350 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 228 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0488 350 Pfam ABC transporter transmembrane region 227 341 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0488 350 SUPERFAMILY ABC transporter transmembrane region 227 348 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0488 Vvi-Chr10 5774167 5775714 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0488 1 94 C3H Transcription Factor Family AT5G41350 48.454 1.97e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0488 - - vvi:100258320 236.498