Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0486 ATGGATAGGGCAAAATACAAGAAAGTTCTTCATGCTTGTTCACTGAAGAAGGATTTGGAACTATTCTCGCATGGAGATCAAACTATTATTAGTGACAAAGGCATAAATTTGAGTGGTGGCCAGAAGCAGCGAGTGCAGCTTGCAAGGGCACTCTATCAAGATGTGGATATTTATTTACTTGATGATCCCATCAGTGCTGTCGATGCACACATTGGTTTGGAATTATTTAAGGAGTAG 237 0.4008 MDRAKYKKVLHACSLKKDLELFSHGDQTIISDKGINLSGGQKQRVQLARALYQDVDIYLLDDPISAVDAHIGLELFKE* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0486 78 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 77 - -
Vvi10g0486 78 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 76 IPR027417 -
Vvi10g0486 78 Gene3D - 1 78 IPR027417 -
Vvi10g0486 78 FunFam Multidrug resistance associated protein, putative 1 69 - -
Vvi10g0486 78 Pfam ABC transporter 17 64 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0486 Vvi-Chr10 5773503 5773739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0486 14 69 Calmodulin-binding Proteins AT2G36910 44.643 1.15e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0486 - - vvi:100258320 147.132