Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0467 ATGTCGTTTTCTTGTGCAAAAGCCTTCTTCCAACGGTTTTGTGTTGAAGAGTTCCAAATGGAGAGAACTAGCCTAGGTTCCGTCTTCTCTAGTCATCTCCTCCCATCTCTTGGGGCCAGAATCAACCAGGCAACAAAGCTTCAAAAACACATAATTTCTCCTTTCAGTCCCCGTTACAGGGCTTGGGAAATGTTGCTGATTATTCTGGTCATCTACTCTGCCTGGATCTGCCCATTTGAGTTTGGATTTCTGCCCTACAAGCAAGACGCGCTTTTCATCTTCGATAACATTGTCAATGGCTTCTTCGCCATCGATATCGTTCTCACTTTCTTTGTAGCATATCTCGACACAGAAACTTATCTTCTTGTTGATGATGCCAAGAAAATTGCAATCAGGTACATATCTACCTGGTTTATCTTCGATGTCTGTTCGACAGCGCCATTTGAAGCTTTCAGCCTCCTGTTCACAAAGCATAACAGTGGACTCGGCTATAAAGCACTCAACATGCTCAGGCTCTGGCGACTGAGACGAGTCAGCTCCCTGTTTGCAAGACTAGAGAAGGACATCCGGTTTAACTACTTCTGGATTCGATGCATAAAGCTCACTTCTGTAACTCTGTTTGCAGTACACTGTGCTGGATGCTTTAACTATCTGATTGCAGATAGATACCCGGATCCAGAACGAACCTGGATTGGTGCAGTCTATCCAAATTTCAAAGAAGAGAACCTCTGGGACAGATATGTAACTTCAATTTACTGGTCTATTACTACACTAACTACTACTGGTTATGGAGACTTGCATGCTGAGAACCCAAGAGAGATGCTGTTTGATATTTTTTACATGCTATTCAACTTGGGATTAACATCTTACCTCATTGGGAACATGACCAATCTTGTTGTTCACTGGACCAGCCGGACCAGAGATTTTAGGGATACAGTCAGGTCTGCTTCAGAGTTTGCAACAAGGAATCAATTGCCCCCACGCATTCAGGATCAGATGCTGTCGCACTTATGTCTCAAGTTCAAAACAGAAGGATTGAAACAACAAGACACTTTGAATGGCCTGCCAAGAGCCATTCGCTCCAGCATTGCACACTATCTCTTCTTCCCTATCGCTCAAAATGTCTATCTTTTCCAGGGTGTTTCTCAGGACTTCCTTTTCCAACTGGTTTCTGAAGTGGAGGCTGAGTATTTCCCACCTAGAGAAGATGTGATTCTACAGAAGGAGGCTCCAACAGATATATATATTCTTGTCTCGGGAGCGGTGGATTTGATAGCATATATTGACGGACATGATCAGATTCTCGGAAAGGCTGTTGCAGGGGATGTGTTTGGAGAGATTGGGGTTTTATGTTATAGGCCACAATCGTTAACAGTCCGGACCTCTGAGCTTTCTCAGATACTAAGATTAAGCAGAACTTCACTGATGAACGCAATCCAAGCAAATATGGAAGATGGACAAATTATTATGAACAATCTTTTCAAGAAACTGAAAGGGCTAGAAAGCTCAGGCTTTACAGACCCACATATGGACCCAGAGTCCATCCTCAGAGAATGGATTGATGGAGTACCACCAGGAGGAAGCCTTTCCCATGCTGGATGTCATGATCAATCACCACATGGAGATCCATCAATACAAGAAGCAAGGGACATAGGTTTACTGGGATCAGAAGCTACAAAGAAGAGTAAAGCAGACAAAGCTCATGAGTCGACTGGATGCGGGATCGATGCAAATTCAGCAGCTGAGGATGGCCAAACGGCTCTTCATGTTGCTGTCTGCAACGGGCATCTTGAAATGGTTAGAATTCTGCTAGAAAGAGGAGCAAATGTGAACAAAAAGGATGCTAGAGGGTGGACCCCAAAAGCTTTAGCGGAACAAGAAGGAAAAAAAAGCATATATGACCTCTTACTAAGTTATGAAAATAGAAGGTTATTAGATGAACACAAAATTCATTTTATTGGGTCAGGCGCAGCTGACTGTTGTACTAGTCAAGGTCTACATACAAGAACGGGGGGGCCCAATTTTCACAACTCTCAATTTAAAAAGGTATCCACAAATTCCAATTCAGGCAGTCCTAGCCCTCCCGGCAACAAAGATGTTATGACATTGACCAAGAGGAGAGTCACTATCCACAGACAGTTTCAAAATGCAAGTACATCACAGGGGCAGTTTGGGAAGTTGATTATTCTACCTGATTCAATAGAAGAGCTACTGCAAATTGCTGGTCAAAAGTTTGGAGGCTACAATCCCACCAAAGTCGTTAGTGCAGGGAATGCAGAAATAGATGACATAAGCGTTATCCGAGATGGGGATCATCTGTTTCTACTTCAAAATGAGAATGAAACTACAATTACAATGTTACCTAATGGTTACTGA 2376 0.4306 MSFSCAKAFFQRFCVEEFQMERTSLGSVFSSHLLPSLGARINQATKLQKHIISPFSPRYRAWEMLLIILVIYSAWICPFEFGFLPYKQDALFIFDNIVNGFFAIDIVLTFFVAYLDTETYLLVDDAKKIAIRYISTWFIFDVCSTAPFEAFSLLFTKHNSGLGYKALNMLRLWRLRRVSSLFARLEKDIRFNYFWIRCIKLTSVTLFAVHCAGCFNYLIADRYPDPERTWIGAVYPNFKEENLWDRYVTSIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVVHWTSRTRDFRDTVRSASEFATRNQLPPRIQDQMLSHLCLKFKTEGLKQQDTLNGLPRAIRSSIAHYLFFPIAQNVYLFQGVSQDFLFQLVSEVEAEYFPPREDVILQKEAPTDIYILVSGAVDLIAYIDGHDQILGKAVAGDVFGEIGVLCYRPQSLTVRTSELSQILRLSRTSLMNAIQANMEDGQIIMNNLFKKLKGLESSGFTDPHMDPESILREWIDGVPPGGSLSHAGCHDQSPHGDPSIQEARDIGLLGSEATKKSKADKAHESTGCGIDANSAAEDGQTALHVAVCNGHLEMVRILLERGANVNKKDARGWTPKALAEQEGKKSIYDLLLSYENRRLLDEHKIHFIGSGAADCCTSQGLHTRTGGPNFHNSQFKKVSTNSNSGSPSPPGNKDVMTLTKRRVTIHRQFQNASTSQGQFGKLIILPDSIEELLQIAGQKFGGYNPTKVVSAGNAEIDDISVIRDGDHLFLLQNENETTITMLPNGY* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0467 791 Gene3D Jelly Rolls 342 500 IPR014710 -
Vvi10g0467 791 ProSiteProfiles Ankyrin repeat region circular profile. 583 614 - -
Vvi10g0467 791 SMART ANK_2a 583 612 IPR002110 GO:0005515
Vvi10g0467 791 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Vvi10g0467 791 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Vvi10g0467 791 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi10g0467 791 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi10g0467 791 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi10g0467 791 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi10g0467 791 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi10g0467 791 ProSiteProfiles KHA domain profile. 707 791 IPR021789 -
Vvi10g0467 791 Pfam KHA, dimerisation domain of potassium ion channel 706 775 IPR021789 -
Vvi10g0467 791 PANTHER POTASSIUM CHANNEL AKT1 28 500 IPR045319 GO:0005249|GO:0006813
Vvi10g0467 791 SMART cnmp_10 377 494 IPR000595 -
Vvi10g0467 791 Gene3D - 60 300 - -
Vvi10g0467 791 FunFam Potassium channel KAT2 365 501 - -
Vvi10g0467 791 Pfam Ankyrin repeats (many copies) 574 620 IPR002110 GO:0005515
Vvi10g0467 791 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi10g0467 791 Gene3D - 549 641 IPR036770 -
Vvi10g0467 791 CDD CAP_ED 377 490 IPR000595 -
Vvi10g0467 791 SUPERFAMILY cAMP-binding domain-like 304 497 IPR018490 -
Vvi10g0467 791 Pfam Cyclic nucleotide-binding domain 397 481 IPR000595 -
Vvi10g0467 791 SUPERFAMILY Ankyrin repeat 573 641 IPR036770 -
Vvi10g0467 791 ProSiteProfiles Ankyrin repeat profile. 583 615 IPR002110 GO:0005515
Vvi10g0467 791 FunFam Potassium channel KAT3 61 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0467 Vvi-Chr10 5452552 5456477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0467 1 778 Ion Channels AT5G46240 58.869 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0467 K21867 - vvi:100233105 1570.06