Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0456 ATGAGCGAAGAAGGGAAGAGCAGAGGCCTCTCCGGCCAACAATCCAATCAGATTCCCTACGGCACGTTTCAAGGCGTCGCCAACTACCCTCCTCTGCCACCTGCTCATCATCCTCAGCCGGTCATCGGTATTCCTCAGCCTGTTCCTCCGCCTGGTTACTACTCTCATGGATACCAAACTGTTCCAGGCTATGCTGTTGTTGAAGGGAGGCCAGTGAGAGAGCGGCGTCTTCCCTGCTGCGGTATTGGTATTGGTTGGTTATTGTTTATCATTGGTTTCTTTTGTGCTGCCATTCCATGGTATATTGGAGCTTTCATTCTACTTTGTGTTCGAGTTGATTACAGAGAAAAACCTGGACTTATTGCATGCACAATAGCTACTGTTCTAGCCGTGATTGCCATTACTCTTGGTGTAACAAAGGGAACACACGCATGGTGA 438 0.4886 MSEEGKSRGLSGQQSNQIPYGTFQGVANYPPLPPAHHPQPVIGIPQPVPPPGYYSHGYQTVPGYAVVEGRPVRERRLPCCGIGIGWLLFIIGFFCAAIPWYIGAFILLCVRVDYREKPGLIACTIATVLAVIAITLGVTKGTHAW* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0456 145 PANTHER 60S RIBOSOMAL PROTEIN L18A-LIKE 1 145 IPR044804 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0456 Vvi-Chr10 5295923 5301781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0456 1 145 Cytoplasmic Ribosomal Protein Gene Family AT1G29970 35.961 5.13e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0456 - K02882 vri:117923489 263.848