Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0448 ATGGAGATCAGCGAGGAAGTGAGAGCAGCTCACAAGCGCGACTTCATGGATTTCTTAGATCAAGATATTGGAAAGGGTATTTACATCGATGAAATCAAAGCCATGATCAACCACAAGCGCCATCGCCTCATCCTTAACATTTCCGATCTCCATGACTACCGCACTGACTTAGCCCACAGGATCCTCAAGAATCCTGGTGAGTACATGCAACCATTCTCTGATGCAGCCACTGACGTCTCACGCAACCTTGATCCCAAGTACTTAAAGGAAGGAGAGCAAATTCTTGTTGGCTTTGAAGGTCCTTTTGTTTCCCGACGTGTTACACCGAGAGATCTTCTCTCTAGCTTCATTGGATCCATGGTCTGTGTTGAGGGCATTGTCACAAAATGTTCTCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCACTTCTGCCCTTCATCTGGGAATTTCACTACCCGTGAATATCGAGATATTACGTCCAATATGGGTTTGCCCACAGGGTCTGTGTATCCTACACGGGATGAAAATGGCAACTTATTGGTGACTGAGTATGGGTTGTGCAAATACAAAGACCATCAAACCTTATCAATGCAAGAAGTGCCTGAGAATTCTGCTCCAGGTCAGCTTCCACGAACTGTGGATGTTATAGTTGAGGATGATCTGGTGGATTCATGCAAGCCTGGAGACCGAGTGGCAATTGTAGGAATATATAAAGCTATTCCAGGAAAAAGCAAGGGCAGTGTCAATGGGGTATTCAGGACTGTGCTCATAGCAAACAATGTTTCTCTGCTGAACAAGGAGGCAAATACACCAATCTACACTCCTGAAGACCTAAAACACATTAAAAGTATAGCTGAGAGAGATGATACGCTTGACCTACTTGGTAATTCACTTGCACCATCTATATATGGGCATTCATGGATAAAGAAAGCTGTGATTTTATTAATGCTTGGTGGAGTGGAAAAGAACCTTAAAAATGGGACCCACTTACGAGGTGACATAAACATGATGATGGTTGGTGATCCTTCCGTTGCCAAGTCTCAACTGTTAAGAGCAATTATGAATATTGCTCCTTTGGCTATATCTACCACTGGTCGAGGTTCTTCTGGTGTTGGTTTGACAGCTGCAGTTACTTCTGATCAAGAAACAGGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATCGAGGTGTTGTTTGTATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCTATACATGAAGTTATGGAGCAGCAGACAGTTACCATTGCCAAAGCTGGTATCCATGCATCATTGAATGCTCGATGCAGTGTAGTGGCAGCTGCAAATCCAATATATGGAACTTATGACCGGTCATTAACCCCAACAAAGAATATTGGACTTCCAGACTCTTTGCTCTCCCGTTTTGATTTACTGTTTATAGTATTGGACCAAATGGATGCTGATATTGATCGTCAAATCTCAGAGCATGTCTTACGTATGCACCGCTTTCGATCTGCAGCTGGAGGTCTGGGAACACTTGATGGGGGTTCAAGATATGGAAAAGATGATGAAGCTGATACGGGTTCATCTGTCTTTGTCAAGTACAATCGCATGCTACATGGGAAGAAAACAGAGAGGGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTAAAAAAGTATATTCATTATGCAAAGCATAGAATTCAGCCTGAGCTGACAGATGAGGCATCTGATCAGATTGCAACGGCATATGCAGAGCTCAGAAATTCCAATTCTAATGCAAAGACTGGAGGAACACTTCCAATTACTGCCAGAACCTTAGAAACAATAATTCGTCTTTCTACTGCTCATGCCAAAATGAAGTTGAGTAGACAGGTTTTGAAGTCTGATGTTGAAGCTGCTTTGAAAGTTCTAAATTTTGCTATATATCATAAAGAATTGACTGAGATGGAGGAGCGTGAGGAAGAAAGGGAGAGAGAATTGGAGAAAAAACGCCAAGTTGATCGCAATGCTGGTGAAACTGATACTGTTGACCATGATTCTGCTGATAGAGAAGGTGCAACAGCGGATGCCATGGAAGTAGATGCCTCTCCTGCTGCCCCATTCAGTGGCAATATTTCTTCAGAAAGGGTAGAAGCATTTGATTCTGTATTTGGTCAGCATATACGGGCAAACCATGTGGATCTTATATCCATTGCAGATGTAGAGAAGGTTGTGAATTCTGGAGCACCTGTCCAGTATTCAAGGGCAGAGATTTTATTCCTATTAAAGAGACTGGAAGATGTTAATAGATTGATGATAGATGACAATGATGTGGTGCATATCATTTGA 2331 0.426 MEISEEVRAAHKRDFMDFLDQDIGKGIYIDEIKAMINHKRHRLILNISDLHDYRTDLAHRILKNPGEYMQPFSDAATDVSRNLDPKYLKEGEQILVGFEGPFVSRRVTPRDLLSSFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPSSGNFTTREYRDITSNMGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGIYKAIPGKSKGSVNGVFRTVLIANNVSLLNKEANTPIYTPEDLKHIKSIAERDDTLDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDADIDRQISEHVLRMHRFRSAAGGLGTLDGGSRYGKDDEADTGSSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASDQIATAYAELRNSNSNAKTGGTLPITARTLETIIRLSTAHAKMKLSRQVLKSDVEAALKVLNFAIYHKELTEMEEREEERERELEKKRQVDRNAGETDTVDHDSADREGATADAMEVDASPAAPFSGNISSERVEAFDSVFGQHIRANHVDLISIADVEKVVNSGAPVQYSRAEILFLLKRLEDVNRLMIDDNDVVHII* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0448 776 Gene3D - 272 664 IPR027417 -
Vvi10g0448 776 MobiDBLite consensus disorder prediction 650 690 - -
Vvi10g0448 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 470 478 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi10g0448 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 331 346 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi10g0448 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 405 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi10g0448 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 419 432 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi10g0448 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 443 455 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi10g0448 776 FunFam DNA helicase 136 190 - -
Vvi10g0448 776 Pfam MCM P-loop domain 278 500 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi10g0448 776 CDD MCM3 293 641 - -
Vvi10g0448 776 SMART AAA_5 332 485 IPR003593 GO:0016887
Vvi10g0448 776 FunFam DNA helicase 5 105 - -
Vvi10g0448 776 Pfam MCM AAA-lid domain 556 639 IPR041562 -
Vvi10g0448 776 Pfam MCM N-terminal domain 12 86 IPR027925 -
Vvi10g0448 776 Pfam MCM OB domain 110 240 IPR033762 -
Vvi10g0448 776 Gene3D - 110 240 IPR012340 -
Vvi10g0448 776 Coils Coil 644 670 - -
Vvi10g0448 776 Gene3D - 2 100 - -
Vvi10g0448 776 ProSiteProfiles MCM family domain profile. 290 496 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi10g0448 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 657 IPR027417 -
Vvi10g0448 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 459 469 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vvi10g0448 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 630 645 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vvi10g0448 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 492 502 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vvi10g0448 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 182 196 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vvi10g0448 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 208 220 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vvi10g0448 776 ProSitePatterns MCM family signature. 399 407 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vvi10g0448 776 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 8 667 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi10g0448 776 SUPERFAMILY Nucleic acid-binding proteins 13 260 IPR012340 -
Vvi10g0448 776 Gene3D - 136 190 - -
Vvi10g0448 776 SMART mcm 105 643 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0448 Vvi-Chr10 5227247 5234809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0448 1 575 Core DNA Replication Machinery Family AT5G46280 80.556 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0448 K02541 - vvi:100253704 1500.72