Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0442 ATGGAAGTGGCAACCGTGAACTCTCGGAAGAACACGGGGAGAAAGAAGATTGAAATAAGAAAGATTGAGAAGAAAAGCTCCTTGGAGGTCACCTTCTCCAAGCGTCGAGCTGGTCTCTTCAAGAAGGCCGGCGAGCTCTGCGTTCTGTGCGGTGCTGAGGCCGCCGTCATCGTCTTCTCTCCGGGCGGGAGGGCCTTCGTCTTCGGTCACCCCACCGCGGACGCTGTCATCGATCACTTCCTCGGGCGCGACACCGACACCAGTTCACGTGGGGTTGTTCCAGCGGAACAAGTGGTGCATGGGCAGGTTCAGAGGCAATACTTGGAGGCTGTGGGGAGGGCGGAAGTGAAGGAGGAGGGCGGGTTTTGGTGGGACGCCCCCATTGAGAACATGGGGTTGAATGAACTGGAGCAGTTCAAGGGTTCCCTTGAGAAGCTGCGGGAGAAGGTGGCGGATCGAGTGGCGGAGATAACCTTGATGATGGTGATGGACAGCGAGAGCGGTGCCGGTCCTTCGTCCACTACCATGGTTGAATATGCAGCGCCACCCCAGGAGTATAATTCTTCTGCTGTTCTCCATGCCCGTGATTTAGCTGCCGATAGTCATAGCCAAGCTGTTCCTCAGGGTTTCCATTTTGGGTTCGGTTTCGATGAACCCCGTTTCTGGTGA 669 0.5635 MEVATVNSRKNTGRKKIEIRKIEKKSSLEVTFSKRRAGLFKKAGELCVLCGAEAAVIVFSPGGRAFVFGHPTADAVIDHFLGRDTDTSSRGVVPAEQVVHGQVQRQYLEAVGRAEVKEEGGFWWDAPIENMGLNELEQFKGSLEKLREKVADRVAEITLMMVMDSESGAGPSSTTMVEYAAPPQEYNSSAVLHARDLAADSHSQAVPQGFHFGFGFDEPRFW* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0442 222 SUPERFAMILY SRF-like 13 82 IPR036879 GO:0003677|GO:0046983
Vvi10g0442 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Vvi10g0442 222 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Vvi10g0442 222 CDD MADS_MEF2_like 13 81 IPR033896 GO:0000977|GO:0045944
Vvi10g0442 222 PANTHER MADS BOX PROTEIN 14 152 - -
Vvi10g0442 222 Gene3D - 24 90 IPR036879 GO:0003677|GO:0046983
Vvi10g0442 222 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Vvi10g0442 222 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Vvi10g0442 222 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Vvi10g0442 222 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Vvi10g0442 222 FunFam Agamous-like MADS-box protein AGL62 24 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0442 Vvi-Chr10 5157289 5157957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0442 9 151 Type I MADS-box Gene Family AT5G60440 41.975 1.17e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi10g0442 SRF-TF 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0442 - - vvi:100262453 441.425