Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0441 ATGAAAATAGAGCCCATACAAGACTTGGAGCAGCGAAGAATTGTCTTCTCCAAATGTAAACGAGGGCTTTTCAAGAAAGCAGCTGAGCTTTCTATACTATGTGGTGCAGATACTGCCATAGTAGTCTTTTCTCCTCAAGGAAATATTGTTCACTCTTTCGGTAGTCCTTCTGTTGACTCCATTATAAATCGGTTTCTTAGCCAAAACCCTCGAGTTAATCCCCAGTACCTCCCGCATGAAGCCTCTAGACATGGGGCTACTATGGTTGCGCTTCGTCGGGAACTCCACCGGGTGGAAAATCAATTGAAAGCTGAGAAGAAGCGAGAGGTCCTTGATGTTGCCCATAAAAAATCAGATGATTATATCAATGGACTCAGCAGGGATGAGTTGCTGCAACTGAAAGGCAAGCTCGAGGCACTGAAGAGGGATGTGGAGGCAAGATCCAAGGAGTTGCAGAAGGAGGTTGCTGCTGCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATGTCAGATGCCAATGGACCACCAGCTGAAGAAACTGATGATGAGACTGATATTTATCATTCCCCATGA 585 0.4479 MKIEPIQDLEQRRIVFSKCKRGLFKKAAELSILCGADTAIVVFSPQGNIVHSFGSPSVDSIINRFLSQNPRVNPQYLPHEASRHGATMVALRRELHRVENQLKAEKKREVLDVAHKKSDDYINGLSRDELLQLKGKLEALKRDVEARSKELQKEVAAASSSSSSSSSSSSSSMSDANGPPAEETDDETDIYHSP* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0441 194 MobiDBLite consensus disorder prediction 151 194 - -
Vvi10g0441 194 PANTHER MADS BOX PROTEIN 3 147 - -
Vvi10g0441 194 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 53 IPR002100 GO:0003677|GO:0046983
Vvi10g0441 194 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vvi10g0441 194 PRINTS MADS domain signature 33 54 IPR002100 GO:0003677|GO:0046983
Vvi10g0441 194 PRINTS MADS domain signature 18 33 IPR002100 GO:0003677|GO:0046983
Vvi10g0441 194 Coils Coil 127 161 - -
Vvi10g0441 194 CDD MADS_SRF_like 2 70 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi10g0441 194 SUPERFAMILY SRF-like 2 70 IPR036879 GO:0003677|GO:0046983
Vvi10g0441 194 Coils Coil 88 108 - -
Vvi10g0441 194 MobiDBLite consensus disorder prediction 154 178 - -
Vvi10g0441 194 Gene3D - 9 78 IPR036879 GO:0003677|GO:0046983
Vvi10g0441 194 SMART madsneu2 1 56 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0441 Vvi-Chr10 5135521 5136105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0441 13 168 Type I MADS-box Gene Family AT5G60440 38.323 1.99e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi10g0441 SRF-TF 9.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0441 - - vvi:104880554 356.295