Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0440 ATGTCCTCAATGGGAAGAAGCGTGGGTCAAAGAGAAGATAAAATTGAGCCCATTCAAAACTTAGAGCACCGAAATATTGTCTTCTCCAAATGTAAGCAAAAGCTTTTCAAGAAAGCAACTAAGCTGTCTACGCTATATGGTGCAAATACAGCCATAGTAGTCTTTTCTCCTCAAGGAAATAATGTTTACTCTTTCGGTAGTCCTTCTGTTGATACCATTTTCAATCGGTTTCTTAACCAAAACCCTGAAGTTAAAGCCCAGTATCTCCTACATGAAGCTTCTAGACATGAGGTGGAAAACCAATTGAAAGCTGAGAAGAAGCGAGGGAAGCTCCTTAATGCTGCCCATAAAAAATCAGAAGATTATTTCAATAGACTCAGCTGGGATGAGTTGCGGCAACTGAAAGGCAAGCTCGAGGCACTAAAGAGGGATGCGGAGGCAAGACACAAGGAGTTGCAGAAAGAGGCTGCTTCTGCTGCTTCTTCTTCAATGTCAGATGCCAATGGACCACCAGTTGAAGAAACTGATGATGAGACTGATATTTATCATTCCCCATGA 558 0.4194 MSSMGRSVGQREDKIEPIQNLEHRNIVFSKCKQKLFKKATKLSTLYGANTAIVVFSPQGNNVYSFGSPSVDTIFNRFLNQNPEVKAQYLLHEASRHEVENQLKAEKKRGKLLNAAHKKSEDYFNRLSWDELRQLKGKLEALKRDAEARHKELQKEAASAASSSMSDANGPPVEETDDETDIYHSP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0440 185 SMART madsneu2 8 68 IPR002100 GO:0003677|GO:0046983
Vvi10g0440 185 Coils Coil 131 162 - -
Vvi10g0440 185 Gene3D - 20 92 IPR036879 GO:0003677|GO:0046983
Vvi10g0440 185 PANTHER MADS BOX PROTEIN 14 145 - -
Vvi10g0440 185 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vvi10g0440 185 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vvi10g0440 185 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vvi10g0440 185 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Vvi10g0440 185 ProSiteProfiles MADS-box domain profile. 8 69 IPR002100 GO:0003677|GO:0046983
Vvi10g0440 185 MobiDBLite consensus disorder prediction 146 185 - -
Vvi10g0440 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0440 Vvi-Chr10 5131334 5131891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0440 6 143 Type I MADS-box Gene Family AT5G60440 35.220 4.27e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi10g0440 SRF-TF 5.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0440 - - vvi:104880553 348.206