Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0438 ATGCTCCCCACCCTGAATCTCTCTGGGGATCTCATCTTGGCCGACCGTCTCTCCGTTCGTTTCGGCAAAGTGGGTCCCGGCGATATCGTCCTCGTTCGATCTCCTCAGAACCCTAGGAAGATTATCACGAAGCGTGTGGTGGGCATGGGAGGGGATCGCGTTACTTTCTCTGTGGATCCCAAGGACAGTCGCAGATGTGAGACTGTTGTTGTTCCAGAGGGGCATGTTTGGATTGCGGGAGATAACATATACGCTTCCACTGATTCAAGGAATTTTGGTGCTGTTCCTTATGGTCTGCTTCAAGGCAAAGTGTTCTGGAGGATATGGCCACCTCAAGGTTTTGGATTGTTAAGACACGTGAATGAGTAA 369 0.5068 MLPTLNLSGDLILADRLSVRFGKVGPGDIVLVRSPQNPRKIITKRVVGMGGDRVTFSVDPKDSRRCETVVVPEGHVWIAGDNIYASTDSRNFGAVPYGLLQGKVFWRIWPPQGFGLLRHVNE* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0438 122 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 1 119 - -
Vvi10g0438 122 Pfam Signal peptidase, peptidase S26 66 109 IPR019533 GO:0004252|GO:0006465
Vvi10g0438 122 Pfam Signal peptidase, peptidase S26 1 57 IPR019533 GO:0004252|GO:0006465
Vvi10g0438 122 SUPERFAMILY LexA/Signal peptidase 1 117 IPR036286 -
Vvi10g0438 122 FunFam Inner membrane protease subunit 1 1 116 - -
Vvi10g0438 122 CDD S26_SPase_I 1 104 IPR019533 GO:0004252|GO:0006465
Vvi10g0438 122 PRINTS Bacterial leader peptidase 1 (S26A) family signature 71 90 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi10g0438 122 PRINTS Bacterial leader peptidase 1 (S26A) family signature 42 54 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi10g0438 122 ProSitePatterns Signal peptidases I lysine active site. 44 56 IPR019757 GO:0008236|GO:0016020
Vvi10g0438 122 Gene3D Umud Fragment, subunit A 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0438 Vvi-Chr10 5081949 5090999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0438 1 117 MADS-box Gene Family AT1G29960 53.846 9.17e-44 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0438 K09647 - vvi:100258854 254.218