Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0430 ATGGTCCAGGTCGTAGATATCTTGAACCTTTCAAGAAATAATTTAAATGGTGGACTACCTGGAAGCTTAGCGAATATGAAGAATCTAAGCTCTCTGGACCTTTCTCAGAACAAGTTCAAGGGCATGATCCCGGAGAGTTATGCAAATATTTCCACCTTGAAGCAGCTGAATCTTTCTTTCAATCAACTGGAAGGTCGTAGCCATTTAGCTGCTTCTCATCGATTCTCCAAGAAAGGTCTGTTGATTCTCGGGGTACTTGGATCCCTCATTGTATTGCTGCTTCTCACATTTTCTGTTATAATCTTCTGTCGGTACTTCAGAAAGCAAAAAACAGTTGAAAATCCAGAACCAGAGTATGCTTCAGCATTGACGCTCAAGAGGTTCAATCAAAAGGATTTAGAAATAGCTACCGGCTTCTTTAGTGCAGAAAACGTCATTGGGGCCAGCACTTTGAGTACGGTATACAAGGGCAGAACGGACGATGGGAAGATTGTAGCCGTAAAGAAATTGAATTTGCAACAGTTCTCTGCTGAGGCTGATAAGTGCTTCAATAGAGAAGTGAAGACCCTGAGCCGACTCAGGCACAGAAACCTCGTAAAGGTACTTGGGTATGCTTGGGAAAGTGGAAAAATAAAGGCTCTAGTTCTGGAATACATGGAGAAGGGGAACTTGGACAGCATTATACATGAACCAGGGGTGGATCCTTCAAGGTGGACTTTATTGGAGAGAATCAATGTTTGTATTTCCATTGCAAGGGGGCTGGTTTACTTGCATTCAGGGTATGATTTCCCCATTGTCCACTGTGACTTGAAGCCTTCTAATGTTCTTTTGGATGGAGATTTGGAGGCCCATGTGAGCGATTTTGGAACAGCTCGAGTTCTGGGTGTTCATCTCCAGGATGGAAGCAGTGTTTCCTCATCATCAGCATTTGAAGGCACAATCGGATACTTGGCACCAGAGTTCGCATACATGAGGGAGCTCACAACCAAAGTCGATGTGTTCAGCTTTGGGATCATAGTAATGGAGTTCCTAACAAAAAGAAGGCCAACAGGACTGGCAGCAGAGGATGGCTTGCCATTGACCTTGCGTCAGCTGGTGGATGCGGCCCTTGCCAGTGGATCCGAAAGGCTTCTTCAAATAATGGACCCTTTCTTAGCTTCAATTGTAACAGCGAAGGAGGGGGAAGTACTGGAAAAGCTGCTTAAACTGGCCTTGTCTTGCACCTGCACTGAGCCTGGGGATCGACCCGACATGAATGAGGTGCTGTCCAGTCTTTTGAAGCTAGGAGCAAAGATACCACCTCCATTACCATCATCATCATGA 1323 0.452 MVQVVDILNLSRNNLNGGLPGSLANMKNLSSLDLSQNKFKGMIPESYANISTLKQLNLSFNQLEGRSHLAASHRFSKKGLLILGVLGSLIVLLLLTFSVIIFCRYFRKQKTVENPEPEYASALTLKRFNQKDLEIATGFFSAENVIGASTLSTVYKGRTDDGKIVAVKKLNLQQFSAEADKCFNREVKTLSRLRHRNLVKVLGYAWESGKIKALVLEYMEKGNLDSIIHEPGVDPSRWTLLERINVCISIARGLVYLHSGYDFPIVHCDLKPSNVLLDGDLEAHVSDFGTARVLGVHLQDGSSVSSSSAFEGTIGYLAPEFAYMRELTTKVDVFSFGIIVMEFLTKRRPTGLAAEDGLPLTLRQLVDAALASGSERLLQIMDPFLASIVTAKEGEVLEKLLKLALSCTCTEPGDRPDMNEVLSSLLKLGAKIPPPLPSSS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0430 440 SMART serkin_6 140 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0430 440 Gene3D Transferase(Phosphotransferase) domain 1 219 432 - -
Vvi10g0430 440 ProSiteProfiles Protein kinase domain profile. 140 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0430 440 Pfam Leucine rich repeat 7 63 IPR001611 GO:0005515
Vvi10g0430 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vvi10g0430 440 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 434 - -
Vvi10g0430 440 Pfam Protein kinase domain 142 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0430 440 SUPERFAMILY L domain-like 8 74 - -
Vvi10g0430 440 Gene3D Phosphorylase Kinase; domain 1 110 218 - -
Vvi10g0430 440 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 219 433 - -
Vvi10g0430 440 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 101 218 - -
Vvi10g0430 440 SUPERFAMILY Protein kinase-like (PK-like) 116 425 IPR011009 -
Vvi10g0430 440 Gene3D Ribonuclease Inhibitor 2 78 IPR032675 -
Vvi10g0430 440 CDD STKc_IRAK 146 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0430 Vvi-Chr10 5029902 5031566 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0430 2 65 Receptor kinase-like Gene Family AT5G46330 39.062 7.73e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi10g0430 Pkinase 4.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0430 K13420 - vvi:100253808 757.673