Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0428 ATGGCTGCCTCCACCATGGCTCTCTCCTCCCCATCATTGGCCGGCACCGCCGTGAAGCTTGGCCCCAATGCCTCCCAAATTCTCGGTGGAGGACGGGTCAGCATGAGGAAAACTGGCTTCAAGGCTCCCTCCGGCAGCCCGTGGTACGGCCCTGACCGTGTCTTGTATTTGGGCCCACTCTCCGGCGATCCCCCATCCTACCTCACTGGAGAATTCCCCGGTGACTACGGCTGGGACACCGCTGGGCTCTCAGCTGACCCCGAGACCTTCGCCAAGAACCGTGAGCTTGAGGTGATCCACTGCCGATGGGCCATGCTTGGAGCCCTTGGCTGCGTCTTCCCAGAGCTGCTGTCCAGGAATGGAGTCAAGTTCGGTGAAGCCGTGTGGTTCAAGGCTGGTGCACAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCCAGCTTGATCCATGCTCAAAGCATTTTGGCCATCTGGGCCTGTCAAGTTATCTTGATGGGAGCCGTTGAGGGCTACCGCATTGCCGGTGGGCCACTTGGTGAGGTGACCGACCCACTGTACCCCGGTGGCAGCTTCGACCCATTGGGGCTTGCGGATGACCCAGAGGCTTTCGCTGAGCTGAAGGTGAAGGAGATCAAGAATGGGAGACTGGCCATGTTCTCCATGTTCGGGTTCTTCGTTCAGGCCATCGTGACCGGAAAGGGGCCCTTGGAAAACCTTGCTGACCACCTTGCCGACCCAGTCAACAACAACGCCTGGGCATATGCCACAAACTTTGTTCCCGGAAAGTGA 795 0.5899 MAASTMALSSPSLAGTAVKLGPNASQILGGGRVSMRKTGFKAPSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0428 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Vvi10g0428 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Vvi10g0428 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Vvi10g0428 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
Vvi10g0428 264 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0428 Vvi-Chr10 5014612 5015406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0428 1 264 Chloroplast and Mitochondria Gene Families AT1G29930 86.891 4.62e-170 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0428 K08912 - vvi:100252004 545.428