Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0419 ATGTCTGATGAGCCAAGAGATCTCTACTACCATGACCCATTCCATGATGATCGACATGGAATCATAGGGAACACTGGTTTTTCCTTCTCTGCCATTAATGATTCCAAAGCTGATTCTTCCATGAGAGCTGCTCCTTCCCCTCCCAATCTACAAGGCTTTGATCCTCCATACATGAGCTTCACCGACTGTCTTAATGGATCTCTGGACTATAATTCACTCACAACAGCCTTTGGCTTGTCACCTTCATCCTCAGAAGCATTTTCTCCCGTTGAAGGCAATCATAAGCCAGTCGCAAACCTCGGAGATTTAGGTGCCAGTGGTGAAATTGCGGGCACTCCTAACTCCTCCATCTCTTCCTCTTCTACTGAGGCCGGCGCTGAAGAGGATTCAAGCAAGAGTAAGAAGGACCGGCAGGCCAAAGTGTCTGAATTAGACGGAGGGGATGGCTCAAAGAAAGTGAACAAGCCCAAGAAGAAGGCAGAGAAAAGGCAAAGAGAGCCACGGTTCGCCTTCATGACTAAGAGTGAGGTCGATCATCTAGAGGATGGATATAGATGGAGAAAGTATGGACAGAAAGCTGTCAAGAATAGCCCTTTTCCAAGAAGCTACTATCGGTGCACTACTCAGAAGTGCACGGTGAAGAAACGAGTGGAGAGATCCTTCCAGGATCCATCGACAGTGATTACAACATATGAAGGCCAGCACAACCATCAGATACCGGTAACGCTGCGAGGGAATGCTGGCGGAATGCTACCACCTTCTGTGTTAACACCAGGACAGATGGGAGGGCCAGGGTTTCCTCAAGAGCTGTTTTTTCAGATGGCTTCTCCCATGAACAATCTCAGTGCTGCAGGCTCTTTCTACCCACAGGGGCTAACCCCTTTTCAGCAGCTGCAGTTTCATGACTATGGGCTCTTGCAAGATGTGGTTCCCTCCATGATTCACAAACAGGAGCCATGA 960 0.4844 MSDEPRDLYYHDPFHDDRHGIIGNTGFSFSAINDSKADSSMRAAPSPPNLQGFDPPYMSFTDCLNGSLDYNSLTTAFGLSPSSSEAFSPVEGNHKPVANLGDLGASGEIAGTPNSSISSSSTEAGAEEDSSKSKKDRQAKVSELDGGDGSKKVNKPKKKAEKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCTVKKRVERSFQDPSTVITTYEGQHNHQIPVTLRGNAGGMLPPSVLTPGQMGGPGFPQELFFQMASPMNNLSAAGSFYPQGLTPFQQLQFHDYGLLQDVVPSMIHKQEP* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0419 319 MobiDBLite consensus disorder prediction 127 155 - -
Vvi10g0419 319 Pfam WRKY DNA -binding domain 181 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g0419 319 ProSiteProfiles WRKY domain profile. 175 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g0419 319 FunFam WRKY transcription factor 57 166 240 - -
Vvi10g0419 319 SUPERFAMILY WRKY DNA-binding domain 172 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi10g0419 319 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 113 245 IPR044810 GO:0003700
Vvi10g0419 319 MobiDBLite consensus disorder prediction 81 174 - -
Vvi10g0419 319 Gene3D WRKY domain 165 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi10g0419 319 SMART WRKY_cls 180 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g0419 319 MobiDBLite consensus disorder prediction 109 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0419 Vvi-Chr10 4894603 4896041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0419 1 319 WRKY Transcription Factor Family AT4G18170 46.450 2.79e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi10g0419 WRKY 7.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0419 - - vvi:100257231 644.81