Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0418 ATGAGGATTCGGATGAAAGTGGCTTTAGCATTGGGGGTTGTGGTTCTTTGTATTGGAATTGGTGTGGGTGTTATGCATTTTGTGGAGGAGCTTGACTGGTTGGATTCATTTTATCTCTCTGTCATGTCAGTTACCACAGTTGGATATGGGGATCGGGCATTTAAGTCTATGCCCGGCCGCATTTTTGCATCAATTTGGTTGCTTGTGTCAACACTTGCTGTTGCTAGAGCATTTCTTTACTTGGCAGAGGCAAGAGTTGATAAGCGGCATAGGAAGATGGCAAAATGGGTGCTTGGTCAGGACATGACTGTTGCTGAGTTTCTTGCTGCTGACATTGACAACAATGGTTTTGTGAGTAAATCAGAATATGTCATATACAAGCTCAAGGAGCTGGGAAAGGTATCTGAGAAAGACATTTCGCAGATCTGTAACAAGTTTGACAGGCTAGACAGTGGCAACTGTGGAAAGATAACTCTTGCTGATCTCATGGAGAACCATCACTGA 504 0.4365 MRIRMKVALALGVVVLCIGIGVGVMHFVEELDWLDSFYLSVMSVTTVGYGDRAFKSMPGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKELGKVSEKDISQICNKFDRLDSGNCGKITLADLMENHH* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0418 167 Gene3D - 74 167 - -
Vvi10g0418 167 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 2 141 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi10g0418 167 FunFam Two-pore potassium channel 3 1 104 - -
Vvi10g0418 167 SUPERFAMILY Voltage-gated potassium channels 2 104 - -
Vvi10g0418 167 ProSitePatterns EF-hand calcium-binding domain. 111 123 IPR018247 -
Vvi10g0418 167 Pfam Ion channel 13 82 IPR013099 -
Vvi10g0418 167 SUPERFAMILY EF-hand 105 163 IPR011992 -
Vvi10g0418 167 Gene3D - 12 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0418 Vvi-Chr10 4879235 4889585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0418 1 164 Ion Channels AT4G18160 75.000 1.18e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0418 K05389 - vvi:100262340 318.161