Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0406 ATGGGCTTGGGAAGCAGAGGAGGAGAAAGAAGAGCAACACACCGCACACCCACCTTCTCGTCATCAGCTGCAAGCAACATGAACAACCCCAACAGCAGGAACAACACAATAGCTCAGTACAATGCGGATGCTAGGCTTCTGGCTGAGTTTGAGCAGTCTGGTGAGTCCGGTAAGTCCTTTAACTACTCAAGATCAGTTATGAATGCTCCTGAATCTGTGCCTGAAGACCAGATAATTGCTTATCTTTCGAGGGTTCAGAGGGGTGGGCTTGTGCAACCTTTTGGTTGTATGCTTGCTATTGAGGAACCCACTTTTAGGATCATTAGTTATAGTGAGAATTCTATGGATTTTTTGGGTTTGAATACTTTATCTGAGACGACACAGTTGAAGAGTCTGATTGGTGTTGATGTAAGAACCCTATTTACGCCTCCTTCCAGTGCTTCTTTAGCCAAAGCGGCCATGTCTAGGGAGATATCACTGTTAAACCCTATTTGGGTCCATTCTAGGAGTGCCCAGAAGACGTTTTATGCTATACTTCATAGAATCGACGTGGGAATTGTGATTGATTTGGAACCGACACGGTCTGGTGATTCAGCATTGTCACTTGCTGGTGCTGTGCAGTCACAGAAACTTGCTGTACGAGCCATTTCCAGGCTGCAGTCGCTTCCTGGGGGTGATATTGGAGTGTTGTGTGATACTGTTGTGGAAGATGTGCAGAAGCTTACTGGGTATGATAGGGTTATGGTTTATAAGTTCCATGATGATGATCATGGTGAAGTTGTGTCTGAAATCAGAAGATCCGATTTGGAGCCGTATTTGGGATTACATTATCCTGCAACAGATATCCCACAAGCTGCTCGGTTCTTGTTCAAACAGAATCGTGTTCGGATTATTTGTGATTGCAATGCAAAAGCAGTAAGGGTGATTCAAAGTGAGGAGCTAAAGCAACCCCTTTGTTTGGTCAACTCAACCCTTCGATCTCCCCATGGCTGCCACTTGCAGTACATGTTCAACATGGGCTGCATTGCCTCCTTGGCAATGGCGGTTGTTATCAATGGCAATGATGCAACAAAGCTTTGGGGATTGGTGGTATGCCACCATACTTCCCCTAGGTATGTTCCTTTTCCCCTTCGCTACGCTTGCGAATTCCTTATGCAGGCATTTGGGCTGCAGCTCTACATGGAGCTTCAATTGGCATCACAGTTGGCAGAGAAGAAGATCCTCAGGATGCAGACCTTATTATGTGACATGCTCCTTCGGGAAGCCCCATTAGGCATTGTGACACATTCTCCAAGTATAATGGATCTCCTGAAGTGTGATGGGGCTGCACTATACTATGGTGGGAGATGTTGGTTATTAGGTGTAACTCCCACCGAATCACAGGTAAAAGATATTGCTGAATGGCTCCTTACCGAACATGGGGATTCTACAGGACTGAGTACAGATAGTTTGGCTGATGCAGGATATCCTGGTGCTGCATTACTGGGTGATGCGGTTTGTGGCATGGCAACTGCAAGAATAACTTCAAAGGATTTCTTGTTATGGTTCAGGTCACACACTGCTAAGGAAGTTAAATGGGGAGGAGCTAAGCATCATCCAGAAGATAAAGATGATGGTGGTAGAATGCACCCAAGATCATCATTCAAAGCATTTCTTGAGGTGGTAAAAAGTAGAAGTTTGCCTTGGGAGGTTTCTGACATCAATGCTATTCACTCTTTACAGCTCATAATGAGAGATTCATTTCAGGACATTGAGGACAGTAGTGGTAAGGTGATGGTTCATACCCAAAAGTATGATTCTGAGATGCAAGGGTTGAATGAGCTTGGTTCTGTGGCATGTGAAATGGTCAAATTGATTGAGACAGCAACCGCTCCCATTTTTGGGGTCGATTCATCTGGTTGCATCAATGGATGGAATGCAAAAATTGCTGAATTGACAGGATTACAAGCTAAAGAAGCTATGGGTAAGTCCCTGGTTGATGAAATTGTTCATGAGGACTTGCGTGGAGCTGTTGACAATCTTCTATGCAGAGCTTTGCAAGGCAAGGAGGACAAGAATGTTGAGTTGAAATTGAAAAATTTTGGGCTAAATCAGCAAGATTCAGCGTTATACATTGTGGTCAATGCCTGCACAAGTAGAGATTACACAAACGATATTGTTGGGGTGTGCTTTGTGGGTCAAGACATCACATCTGAGAAAATTGTCATGGATAAATTCATCCGCTTGCAAGGGGATTACAAGGCCATTGTACAATGTCTTAATCCATTAATCCCACCTATATTTGCTTCTGATGGGAATGCTTGCTGTTCTGAATGGAACACATCCCTGGAAAAGCTAACTGGTTGTATGAGACATGAGGTTATAAGAAAAATGCTTCCAGGAGAAGTTTTTGGAGGTCTATGTCCATTGAAAAGTCAAGATACACTTACTAGATTTACGATTCTATTATACCAAGCAATAAGTGGTCAAGATACAGAGAAGTTCCCATTTGGGTTTTTTGATAAGAGTGGAAAACTTGTGGAGGTTCTCTTAACAGCTAATAAAAGAACTGATGCGAATGGGAATGTGATTGGGTGTTTCTGCTTCTTGCAGATTGATACACCTGACAAGCATCAGGGCTTGGGACACGGACCAGAGTATAGGGAGTGTTTTTCAAAATTTAAGGAGTTAGCTTATATAAGACAAGAGATGAAAAATCCTTTGAATGGAATTCGGTTTACCCACAAACTTTTGGAAACTACAGCTACCTCAGTTTACCAGAAACAATTTCTTGAAACTAGTGAGGCATGTGAAAGGCAGATGATGTCTATCATTGCAGATATAGATATGGGAATAATAGAAGAGGGCAGCATGGAGCTAAATGTGGAAGAGTTTCTATTGGGAAATGTTTTGGATGCTGTTGTCAGCCAAGTAATGATGTTGCTGAAGGAAAAGAAGTTACAGCTAGTTTGTGAGATTCCAGAGGAAATCAAAACACTTCCTCTTTCCGGTGATCAAATTAAGCTTCAGCAGGTCTTGTCTGATTTCTTGCATAATATAGTGCACCATGCACCATCTTCAGATGGCTGGATAGAAATCAAGATTTCAACTGGTTTAAAGATGATACAGGATTTTAATGAATTCGTCCATTTACAGTTCAGAATGACCCACATTGGCCAGGGCCTTCCTCCTGACCTAATCCAAGATATGTTTGAAGGAGGAGACCAGTGGAATACCCAGGAAGGCTTAGGGCTGAACCTGTCAAGGAAACTTCTCAGTGCAATGAATGGTCGCGTCCAATATGTCAGAGAGCATGGTAAATGTTACTTCCTTGTTGACATTGATCTGAAGAACAGGAGAGCAAGAGAAAAGGGGAAACAGATACAAGTAAGATGA 3375 0.4287 MGLGSRGGERRATHRTPTFSSSAASNMNNPNSRNNTIAQYNADARLLAEFEQSGESGKSFNYSRSVMNAPESVPEDQIIAYLSRVQRGGLVQPFGCMLAIEEPTFRIISYSENSMDFLGLNTLSETTQLKSLIGVDVRTLFTPPSSASLAKAAMSREISLLNPIWVHSRSAQKTFYAILHRIDVGIVIDLEPTRSGDSALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRIICDCNAKAVRVIQSEELKQPLCLVNSTLRSPHGCHLQYMFNMGCIASLAMAVVINGNDATKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLASQLAEKKILRMQTLLCDMLLREAPLGIVTHSPSIMDLLKCDGAALYYGGRCWLLGVTPTESQVKDIAEWLLTEHGDSTGLSTDSLADAGYPGAALLGDAVCGMATARITSKDFLLWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFKAFLEVVKSRSLPWEVSDINAIHSLQLIMRDSFQDIEDSSGKVMVHTQKYDSEMQGLNELGSVACEMVKLIETATAPIFGVDSSGCINGWNAKIAELTGLQAKEAMGKSLVDEIVHEDLRGAVDNLLCRALQGKEDKNVELKLKNFGLNQQDSALYIVVNACTSRDYTNDIVGVCFVGQDITSEKIVMDKFIRLQGDYKAIVQCLNPLIPPIFASDGNACCSEWNTSLEKLTGCMRHEVIRKMLPGEVFGGLCPLKSQDTLTRFTILLYQAISGQDTEKFPFGFFDKSGKLVEVLLTANKRTDANGNVIGCFCFLQIDTPDKHQGLGHGPEYRECFSKFKELAYIRQEMKNPLNGIRFTHKLLETTATSVYQKQFLETSEACERQMMSIIADIDMGIIEEGSMELNVEEFLLGNVLDAVVSQVMMLLKEKKLQLVCEIPEEIKTLPLSGDQIKLQQVLSDFLHNIVHHAPSSDGWIEIKISTGLKMIQDFNEFVHLQFRMTHIGQGLPPDLIQDMFEGGDQWNTQEGLGLNLSRKLLSAMNGRVQYVREHGKCYFLVDIDLKNRRAREKGKQIQVR* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0406 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 759 863 IPR035965 -
Vvi10g0406 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 195 IPR035965 -
Vvi10g0406 1124 ProSiteProfiles PAC domain profile. 685 741 IPR000700 -
Vvi10g0406 1124 SMART gaf_1 226 406 IPR003018 GO:0005515
Vvi10g0406 1124 Gene3D - 401 574 IPR043150 -
Vvi10g0406 1124 CDD HATPase_Phy-like 997 1109 IPR044767 -
Vvi10g0406 1124 Pfam Phytochrome region 409 582 IPR013515 GO:0006355|GO:0009584
Vvi10g0406 1124 Gene3D PAS domain 758 870 - -
Vvi10g0406 1124 Gene3D - 928 1103 IPR036890 -
Vvi10g0406 1124 FunFam Phytochrome 607 739 - -
Vvi10g0406 1124 ProSiteProfiles PAS repeat profile. 745 823 IPR000014 -
Vvi10g0406 1124 SMART HKATPase_4 997 1111 IPR003594 -
Vvi10g0406 1124 CDD HisKA 890 941 IPR003661 GO:0000155|GO:0007165
Vvi10g0406 1124 Gene3D PAS domain 85 329 - -
Vvi10g0406 1124 ProSiteProfiles PAS repeat profile. 611 682 IPR000014 -
Vvi10g0406 1124 SUPERFAMILY GAF domain-like 206 392 - -
Vvi10g0406 1124 SMART HisKA_10 885 949 IPR003661 GO:0000155|GO:0007165
Vvi10g0406 1124 Pfam PAS fold 614 729 IPR013767 GO:0006355
Vvi10g0406 1124 Pfam PAS fold 745 864 IPR013767 GO:0006355
Vvi10g0406 1124 Gene3D PAS domain 613 733 - -
Vvi10g0406 1124 CDD PAS 756 864 IPR000014 -
Vvi10g0406 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 725 IPR035965 -
Vvi10g0406 1124 PRINTS Phytochrome signature 511 530 IPR001294 GO:0006355|GO:0009584
Vvi10g0406 1124 PRINTS Phytochrome signature 633 648 IPR001294 GO:0006355|GO:0009584
Vvi10g0406 1124 PRINTS Phytochrome signature 707 724 IPR001294 GO:0006355|GO:0009584
Vvi10g0406 1124 PRINTS Phytochrome signature 544 562 IPR001294 GO:0006355|GO:0009584
Vvi10g0406 1124 PRINTS Phytochrome signature 614 630 IPR001294 GO:0006355|GO:0009584
Vvi10g0406 1124 PRINTS Phytochrome signature 727 747 IPR001294 GO:0006355|GO:0009584
Vvi10g0406 1124 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355|GO:0009584
Vvi10g0406 1124 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355|GO:0009584
Vvi10g0406 1124 PRINTS Phytochrome signature 426 446 IPR001294 GO:0006355|GO:0009584
Vvi10g0406 1124 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355|GO:0009584
Vvi10g0406 1124 MobiDBLite consensus disorder prediction 14 35 - -
Vvi10g0406 1124 Pfam PAS fold 80 192 IPR013654 GO:0006355
Vvi10g0406 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 997 1109 IPR003594 -
Vvi10g0406 1124 ProSiteProfiles Histidine kinase domain profile. 892 1111 IPR005467 -
Vvi10g0406 1124 FunFam Phytochrome 758 866 - -
Vvi10g0406 1124 SMART pas_2 747 813 IPR000014 -
Vvi10g0406 1124 SMART pas_2 613 680 IPR000014 -
Vvi10g0406 1124 FunFam Phytochrome 401 531 - -
Vvi10g0406 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 386 IPR016132 -
Vvi10g0406 1124 NCBIfam PAS domain S-box protein 618 733 IPR000014 -
Vvi10g0406 1124 PIRSF Phytochrome_conventional 12 1119 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vvi10g0406 1124 Gene3D - 207 557 IPR029016 -
Vvi10g0406 1124 Pfam His Kinase A (phospho-acceptor) domain 889 948 IPR003661 GO:0000155|GO:0007165
Vvi10g0406 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Vvi10g0406 1124 CDD PAS 622 729 IPR000014 -
Vvi10g0406 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 952 1100 IPR036890 -
Vvi10g0406 1124 MobiDBLite consensus disorder prediction 1 35 - -
Vvi10g0406 1124 PANTHER OS08G0260000 PROTEIN 77 944 - -
Vvi10g0406 1124 Pfam GAF domain 226 396 IPR003018 GO:0005515
Vvi10g0406 1124 SUPERFAMILY GAF domain-like 404 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0406 Vvi-Chr10 4672999 4683106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0406 20 1111 Histidine Kinase Gene Family AT4G18130 66.999 0.0 1529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0406 K12123 - vvi:100264019 2244.16