Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0405 ATGGAGCGGTCTTCAGACCATTCATCTTCAGGTCCTTCCAAGATTCCATATGTGAGTATTCCTAAGGCAGTGGGAAGTGGTGCATGGGGGATGCGACCTGGATCTGATGGTTACAACGCATCAAATGATGCTACCCTTTTCTCATGCTCATTACCTGTTCTTCCACATGAAAAGTTGAACTTAAATGATACCGAACATTGTTGTCAGTCTATTGATGATGCTGGATTAGATAAACTCCAACAAGATGTGGAGGCTGGCGAGTCACTTGAGGATGATGGAATTCATGCTATTGGAAGCTTGCTTCCTGATGATGAGGATGAGCTTTTAGCTGGAATAATGGATGATTTTGACCTTAGTGGATTGTCTAATCCAATGGAGGATGTGGAAGAGTATGATCTTTTTGGCAGTGGAGGAGGCATGGAGTTGGAAATTGATCCACAGGAGAGTCTGAACATGGGTATGGCAAAGGTGAGCTTATCTGATGGTGTTGTTGGGAATGGCTTGGCTCAGTATGGTCTTCCAAATGGCTCGGGAACTGTTGCGGGGGAACATCCATATGGGGAGCATCCTTCTAGGACGTTATTTGTTCGTAATATCAATAGTAATGTTGAGGATTCAGAACTGAGAACTCTTTTTGAGCAATATGGCGCGATCAGAACTTTGTACACTGCATGTAAACATAGGGGCTTTGTGATGATATCTTACTATGACATCCGTGCTGCGCGAACTGCTATGCGTGCATTACAAAACAAGCCATTGCGACGGAGGAAACTAGACATTCACTTTTCAATTCCGAAGGATAACCCATCTGACAAGGATGTTAATCAAGGAACTCTGGTAGTTTTTAATTTGGATCCATCAGTTTCAAATGATGATCTCCGCCAAATATTTGGGGCTTATGGGGAGGTTAAAGAGATAAGGGAAACACCACACAAGAGGCATCATAAATTCATTGAATTTTATGATGTTAGAGCTGCAGAAGCAGCACTTAGGTCATTAAATAGGAGTGACATAGCCGGCAAACGCATAAAGCTTGAACCTAGTCGCCCTGGCGGAGCACGTCGAAACTTGATGTTGCAACTGAATCAGGAGCTTGAACAAGATGAATCTCGGAGTTTCCGACATCATGTGGGTTCTCCAATGGCCAACTCTCCTCCAGGTAGCTGGGCGCAGTTCAGCAGCCCTATTGAACACAGTCCTTTGCAATCTCTTAGTAAATCCCCTGGTTTCAGGACTGTGAGCCCAACGACTAGCAACCATTTACCTGGATTAGCTTCAATTCTGAATTCTCAAATATCAAATTCAGTGAAGGTTGCACCTATTGGCAAGGACCAAGGAAGGGGTATTCATGTAGAAAATATATTCAACAACACAAATTCAAACCATGGAACTGCTTTCCAACAGTCTCATTCATTTTCTGAGCCAAATTTGGGCCCATATCCTGGTAATGGGTCCTCTTTTGGTGCTTCAACTTCAAATGGATCTGGAATTGAGACGTTGTCTGGGCCACAATTTCTTTGGGGAAGTCCAGCTCCTTACTCAGAGCACACAAATTCTTCAGCCTGGCAACCACCATCTATGGGGCATCCATTTGCATCCAATGGACAGGGCCGTGGCTTTCCATACTCTGGGCGGCATGGTTCTTTCCTTGGTTCATCCCGACACCACCACCATCATCACGTTGGATCTGCCCCATCAGGTGTTCCATTAGAGAGGCACTTTGGTTACTTCCCAGAATCACCAGAAGCGTCATTCATGACTCCTGTTGCTTTTGGAGGCATGGGTTTGGCCCACAATGATGGAAGTTTCATGTTGAATATGAGTGCTCGCGCTGGCATGAATGCTGGCATTTCTATTCCAGCAAACATGTCTGAAAGTGGTTCTGCCAATTTTAGAATGATTTCTTCTCCAAGGCTTAGCCCCATGTTCCCAGGTAATGGTCCATTTCCAGGTCTGGCACCCTCCAACATAGAGGGTTTAGCTGATCGTGGACGGAGTCGGTGGGTTGAGAATAATGGGAACCAGATAGATAGCAAGAAGCAGTTTCAGCTTGACTTGGATAAAATTCTCAATGGGGAAGATACTCGGACAACTCTTATGATTAAAAATATTCCCAATAAGTACACCTCAAAGATGTTGCTAGCTGCTATTGATGAATATCACAGGGGTACTTATGATTTCCTTTATCTGCCGATTGACTTTAAGAATAAATGCAATGTGGGCTACGCATTTATCAATATGCTGTCTCCTTCGCACATTATCCCGTTCTATCAGGCTTTTAATGGTAAGAAGTGGGAGAAATTCAATAGTGAGAAAGTTGCTTCCTTGGCATATGCTAGAATCCAGGGAAAGGCTGCCCTAGTCACACATTTCCAGAATTCAAGCTTGATGAATGAAGATAAACGCTGTCGGCCAATTCTCTTCCACTCTGAGGGTCCGGAAGCTGGTGATCAGATCATCCAGGAACATTTGCCCTCCAACAGTTTGAACATCCAGGTTCCTCAGCCGAATGGGTCACAAATAGGTGATACTCCGGAAAGCCCTGAAATGGTTCTTTTGTGTGAGAAGCCAGAGAAGAGTTGA 2583 0.4444 MERSSDHSSSGPSKIPYVSIPKAVGSGAWGMRPGSDGYNASNDATLFSCSLPVLPHEKLNLNDTEHCCQSIDDAGLDKLQQDVEAGESLEDDGIHAIGSLLPDDEDELLAGIMDDFDLSGLSNPMEDVEEYDLFGSGGGMELEIDPQESLNMGMAKVSLSDGVVGNGLAQYGLPNGSGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGAIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDVNQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELEQDESRSFRHHVGSPMANSPPGSWAQFSSPIEHSPLQSLSKSPGFRTVSPTTSNHLPGLASILNSQISNSVKVAPIGKDQGRGIHVENIFNNTNSNHGTAFQQSHSFSEPNLGPYPGNGSSFGASTSNGSGIETLSGPQFLWGSPAPYSEHTNSSAWQPPSMGHPFASNGQGRGFPYSGRHGSFLGSSRHHHHHHVGSAPSGVPLERHFGYFPESPEASFMTPVAFGGMGLAHNDGSFMLNMSARAGMNAGISIPANMSESGSANFRMISSPRLSPMFPGNGPFPGLAPSNIEGLADRGRSRWVENNGNQIDSKKQFQLDLDKILNGEDTRTTLMIKNIPNKYTSKMLLAAIDEYHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSHIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGPEAGDQIIQEHLPSNSLNIQVPQPNGSQIGDTPESPEMVLLCEKPEKS* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0405 860 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 265 IPR000504 GO:0003723
Vvi10g0405 860 MobiDBLite consensus disorder prediction 365 417 - -
Vvi10g0405 860 SUPERFAMILY RNA-binding domain, RBD 189 352 IPR035979 GO:0003676
Vvi10g0405 860 MobiDBLite consensus disorder prediction 513 530 - -
Vvi10g0405 860 FunFam MEI2-like protein 5 isoform 2 181 275 - -
Vvi10g0405 860 Pfam RNA recognition motif 2 696 792 IPR007201 -
Vvi10g0405 860 CDD RRM1_MEI2_like 191 267 IPR034453 -
Vvi10g0405 860 MobiDBLite consensus disorder prediction 513 565 - -
Vvi10g0405 860 PANTHER RNA RECOGNITION MOTIF-CONTAINING 46 814 - -
Vvi10g0405 860 SUPERFAMILY RNA-binding domain, RBD 698 783 IPR035979 GO:0003676
Vvi10g0405 860 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 350 IPR000504 GO:0003723
Vvi10g0405 860 SMART rrm1_1 278 346 IPR000504 GO:0003723
Vvi10g0405 860 SMART rrm1_1 698 774 IPR000504 GO:0003723
Vvi10g0405 860 SMART rrm1_1 193 261 IPR000504 GO:0003723
Vvi10g0405 860 MobiDBLite consensus disorder prediction 384 417 - -
Vvi10g0405 860 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 258 IPR000504 GO:0003723
Vvi10g0405 860 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 344 IPR000504 GO:0003723
Vvi10g0405 860 CDD RRM3_MEI2_like 699 784 IPR034454 -
Vvi10g0405 860 Gene3D - 180 275 IPR012677 -
Vvi10g0405 860 Gene3D - 276 376 IPR012677 -
Vvi10g0405 860 CDD RRM2_MEI2_like 276 346 - -
Vvi10g0405 860 FunFam Protein MEI2-like 1 276 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0405 Vvi-Chr10 4661449 4669336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0405 189 334 Eukaryotic Initiation Factors Gene Family AT1G71770 27.097 8.64e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0405 - - vvi:100246862 1711.81