Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0403 ATGGCGGTGCCGTTGCTGTCCAAGAAGATCGTGAAGAAGAGAGTCAAGAAGTTCAAGAGGCCTCAGAGCGATCGCAAGGTCTCTGTCAAGACAAACTGGCGCAGACCCAAGGGTATTGATTCTCGAGTCCGTAGAAAGTTCAAGGGATGCACTCTGATGCCCAACATTGGTTATGGGTCAGACAAGAAGACCCGCCATTATCTTCCTAATGGTTTCAAGAAATTTGTTGTGCACAATGCTCAAGAGCTTGAACTGTTGATGATGCACAACAGGACTTACTGTGCTGAGATTGCACACAATGTGTCCACCAGGAAGAGGAAAGAGATTGTGGAGAGAGCAGCCCAGCTTGATGTTGTTGTTACCAACAAGCTGGCCAGGTTGCGCAGCCAGGAGGACGAGTGA 402 0.49 MAVPLLSKKIVKKRVKKFKRPQSDRKVSVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNAQELELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0403 133 SMART Ribosomal_L32e_2 15 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vvi10g0403 133 SUPERFAMILY Ribosomal protein L32e 2 131 IPR036351 -
Vvi10g0403 133 CDD Ribosomal_L32_L32e 22 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vvi10g0403 133 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 1 133 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vvi10g0403 133 Pfam Ribosomal protein L32 16 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0403 1 133 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 86.466 2.13e-86 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0403 K02912 - vvi:100243581 258.07