Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0398 ATGAATGGAGAGGGAGGAGAAACCAGCAAAAGAGATGAGATCAGTCAGCAGAAGGTTGCATTCTACAGACTCTTCTCATTTGCAGATGGTTTGGACATAGTGTTGATGACTGTTGGCACCTTGGGTGCAATCGCAGATGGGTTTACGCAGCCGCTCATGACGCTAATGATGGGTCGTGCCATCCACTCCTTTGCAACCTCGGATCCTTCTCATGTTGTTCATCAAGTATCAAAGGTGAGCCTGATGTTCTTGTACTTGGCTGCTGGTTCGGGCTTGGCAGCATTCATACAGTCTTCGAGTTGGAGGGTGACTGGAGCTAGACAGGCAAATAGCATCCGAAGTCTCTACTTGAAAACAATATTAAGACAGGACATTGAATTCTTTGACACTGAAACTACCGCTGGAGAGGTCATAGGGAGGTTGTCTGGAGACACTATTCTCATTGAGGATGCCATGGGGGAAAAGGTTGGAAAGTTCTTACAAAATATGTCAACTTTTGTTGCTGGTTTTACGATTGCCTTCTTAAAAGGGTGGCGACTCGTCCTAGTTTTGCTTCCAACAATTCCTCTTGTTGTCATGGCTGGAGCAACAATGGCAATGATGATGTCAAAAATGTCGAGTCATGGACAAGTTGCATATGCAGAAGCCGGAGCTGTAGTAGAAGAAACGGTAGGAGCCATCAGAACAGTGGCATCCTTCACTGGGGAGAAGCACGCCATAGAAAATTATAACAAGAAGCTCAAAGTGGCCTACACCTCTACTGTTCAACAAGGGCTGGCCTCAGGCTTTGCAGTTGGAGCGGTTGTGGTAATTGTCTTTAGCAGTTATGGGCTTGCCATATGGTATGGATCAAAACTGATCATAGAGGAGGGATACAATGGTGGAACTGTCGTCAACGTCTTGCTCTCTCTCATGGTTGGAGGATCGTCATTGGGCCAGGCATCCCCATGTCTAAGTGCTTTTACAGCAGGGCAGGCAGCAGCATATAAGATGTTTGAGACAATCAAACGGAAACCAAAAATTGATACCTATGATACAAGTGGGATTGTATTGGAAGAAATCAGGGGAGAAATTGAACTCAAAGATGTGTACTTCAAATACCCATCAAGGCCAGACGTGCAGATATTTGGTGGTTTCTCATTGCACATTCCAAGTAGAACAACTGCAGCTCTAGTTGGGCAGAGTGGAAGTGGGAAGTCGACAGTAATCAGCCTGTTGGAAAGATTCTATGATCCCGAAGCCGGTGAAGTACTGATTGATGGTGTTAATCTAAAGAAACTAAATATCAGATCTATAAGGGAGAAAATTGGGCTAGTCAGTCAGGAACCTATCTTGTTTGCAGGTACCATAAAGGAGAACATATCATATGGTAAGAAAGATGCAACCAATGAAGAGATCAGAGCAGCAATTGAGCTTTCTAATTCTGCAAGATTCATCAACAAGCTACAAAGGGGGCTGGACACAATGGTGGGTGAACATGGAACGCAGTTATCTGGAGGACAGAAGCAAAGAATTGCAATTGCAAGAGCCATTTTGAAGAATCCAAGAATCCTTCTCCTCGATGAAGCAACAAGCGCACTGGATGCTCAGTCAGAAAGAATTGTCCAAGATGCCCTATTAAACATCATGGCCGACCGGACAACTGTAGTCGTAGCTCATCGTTTAACAACTATCAGGAATGCAGATGTCATAGCAGTGGTGCATCAAGGGAAAATTGTGGAGCAAGGAACTCATGTGGAGTTGATCAGAGATCCCAATGGGGCTTACTCCCAGCTGGTTCGCCTCCAAGAAGGAACCAATCAAGCTGCAGATGCTCAAAAGGTGGATAAGATTTGTGAAAGAGAGAATACCCAAAAGAGGTCCAGAACACGTAGTTTGTCCTATAAATCCGTGAGCATGGATTCATCAAGTAGCCACCACTCCTATTCACTTAGCTTTGGCCTCCCTGTTCCAATTGGTATGGATGAGATCGAAGTGGGCAGGGAGGAGACTACTCAACAAGGTGAGGCAGAAAATGAGAAAAGCCCTAAAGTTCCACTGAGACGATTGGCCTATCTGAACAAGCCTGAAGTGCCAGTTCTGCTGCTTGGAACCATTGCAGCTGCCGTACATGGTCTAGTCTTCCCCATGTTTGCATTCTTACTTTCAACAGCTGTTAAAATTTTCTATGAACCTCCCAACCAGCTACAAAAAGATTCCAAGTTTTGGGCACTCTTTTTTGTGGGTCTGGGTGTGCTGGCTCTGATAGTTGGTCCACTGCAAAATTTTCTCTTTGGAGTTGCAGGTGGTAAGTTGATAGAACGAATTCGTTCTTTGTCATTCGAAAAGGTTGTGCATCAAGAAATCACTTGGTTTGATCACCCAGGAAATTCAAGTGGTGCAGTTGGTGCGAGGCTATCCACCGATGCTTCAACAGTGCGAGGTCTCGTGGGTGATGCATTGGCCCTACTTGTCCAGAACTTAACAACAATCATAGTAGGACTCATCATATCATTCACAGCAAACTGGATCTTGGCACTAATAATTCTAGGTGTGATGCCATTGCTAGGTTTTGAAGGATTCGTTCAGGGGAAATTTCTAAAGGGATTCAGTGCAGAAGCCAAGGTGATGTATGAAGAAGCAAGTCATATTGTCAATGAGGCTCTTGGCAGCATCAGAACTGTTGCATCATTTTGTGCAGAAGAGAAGGTGATGGAAATGTATGAACAAAAATGTGAGGCCACCGTGAAGCAGGGAATTAGGATAGGACTTGTGAGTGGTATAGGGTTTGGGTCATCTGCCCTCGCACTCCACTGCACAAATGCGCTTGTTTTCTATATTGGAGCTATTCTTGTGGAACATGGGAAGGCGACTTTCCCACAACTTTTCAAGGTTTTCTTTGCTTTGACAATTTCAGCAGTTGGACTTTCCCACGCTAGTGCCATGGCTCCTGAAACCACCAAAGCTAAGGATTCAGCTGCTTCCATATTTCACCTTCTTGACAGCAAGCCCAAGATTGATTCAAGCATCAAGGAGGGCACAACCCTATCAACTGTGAAGGGTGACATTGAGTTGCAGCATGTCAGCTTCAAATATCCAACAAGGCCAGATGTTCAAATTTTCAGAGACTTGTGCTTCAGCATCCCCTCCGGGAAGGCTGTTGCTCTAGTTGGAGAGAGTGGAAGTGGGAAGTCAACAGTGATCAGCCTAATAGAGAGGTTCTATAATCCTGATTCCGGGGCTATATTGTTGGATGGAATGGAAATCCACAAGTTCAAACTAAGCTGGCTGAGACAACAGATGGGGTTGGTAGGTCAAGAGCCTATACTTTTCAATGAGACAATTCGAGCCAACATAGCTTATGGTAAACAGGGAAATGCTTCTGAAGACGAGATCATTGCAGCCACAAGAACCGCAAATGCCCATGACTTCATATCTGCATTACCCCAGGGCTATGAAACCACAGTTGGGGAACGAGGGATGCAGTTGTCAGGAGGGCAGAAGCAGAGGATAGCCATTGCAAGGGCAATCATAAAGGACCCAAAGATCCTTTTGCTTGATGAGGCAACCAGTGCACTAGATGCAGAGTCAGAGCGTGTAGTACAAGAAGCATTAGATAGAGTGATGGTGCATAGAACAACTGTTGTCGTGGCTCACTGCCTTACCACCATCAGGGGAGCTGATATGATCGCAGTGGTGAAGAATGGTGTGATTGCCGAGATGGGAAGACATGATAAACTGATGAAGATAGCTGATGGGGCTTATGCATCAATGGTAGCACTTCACATGAGTTCATCCAAAGGGGAAGAGCAAGAGTAA 3798 0.4526 MNGEGGETSKRDEISQQKVAFYRLFSFADGLDIVLMTVGTLGAIADGFTQPLMTLMMGRAIHSFATSDPSHVVHQVSKVSLMFLYLAAGSGLAAFIQSSSWRVTGARQANSIRSLYLKTILRQDIEFFDTETTAGEVIGRLSGDTILIEDAMGEKVGKFLQNMSTFVAGFTIAFLKGWRLVLVLLPTIPLVVMAGATMAMMMSKMSSHGQVAYAEAGAVVEETVGAIRTVASFTGEKHAIENYNKKLKVAYTSTVQQGLASGFAVGAVVVIVFSSYGLAIWYGSKLIIEEGYNGGTVVNVLLSLMVGGSSLGQASPCLSAFTAGQAAAYKMFETIKRKPKIDTYDTSGIVLEEIRGEIELKDVYFKYPSRPDVQIFGGFSLHIPSRTTAALVGQSGSGKSTVISLLERFYDPEAGEVLIDGVNLKKLNIRSIREKIGLVSQEPILFAGTIKENISYGKKDATNEEIRAAIELSNSARFINKLQRGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAQSERIVQDALLNIMADRTTVVVAHRLTTIRNADVIAVVHQGKIVEQGTHVELIRDPNGAYSQLVRLQEGTNQAADAQKVDKICERENTQKRSRTRSLSYKSVSMDSSSSHHSYSLSFGLPVPIGMDEIEVGREETTQQGEAENEKSPKVPLRRLAYLNKPEVPVLLLGTIAAAVHGLVFPMFAFLLSTAVKIFYEPPNQLQKDSKFWALFFVGLGVLALIVGPLQNFLFGVAGGKLIERIRSLSFEKVVHQEITWFDHPGNSSGAVGARLSTDASTVRGLVGDALALLVQNLTTIIVGLIISFTANWILALIILGVMPLLGFEGFVQGKFLKGFSAEAKVMYEEASHIVNEALGSIRTVASFCAEEKVMEMYEQKCEATVKQGIRIGLVSGIGFGSSALALHCTNALVFYIGAILVEHGKATFPQLFKVFFALTISAVGLSHASAMAPETTKAKDSAASIFHLLDSKPKIDSSIKEGTTLSTVKGDIELQHVSFKYPTRPDVQIFRDLCFSIPSGKAVALVGESGSGKSTVISLIERFYNPDSGAILLDGMEIHKFKLSWLRQQMGLVGQEPILFNETIRANIAYGKQGNASEDEIIAATRTANAHDFISALPQGYETTVGERGMQLSGGQKQRIAIARAIIKDPKILLLDEATSALDAESERVVQEALDRVMVHRTTVVVAHCLTTIRGADMIAVVKNGVIAEMGRHDKLMKIADGAYASMVALHMSSSKGEEQE* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0398 1265 SUPERFAMILY ABC transporter transmembrane region 23 339 IPR036640 GO:0005524|GO:0016020
Vvi10g0398 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 695 981 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0398 1265 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Vvi10g0398 1265 Pfam ABC transporter 1036 1184 IPR003439 GO:0005524
Vvi10g0398 1265 PANTHER ABC TRANSPORTER B FAMILY 6 597 IPR039421 -
Vvi10g0398 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 331 - -
Vvi10g0398 1265 SMART AAA_5 1043 1216 IPR003593 GO:0016887
Vvi10g0398 1265 SMART AAA_5 385 571 IPR003593 GO:0016887
Vvi10g0398 1265 SUPERFAMILY ABC transporter transmembrane region 676 997 IPR036640 GO:0005524|GO:0016020
Vvi10g0398 1265 FunFam ABC transporter B family member 1 348 597 - -
Vvi10g0398 1265 FunFam ABC transporter B family member 1 674 982 - -
Vvi10g0398 1265 Pfam ABC transporter transmembrane region 694 966 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0398 1265 Pfam ABC transporter transmembrane region 37 307 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0398 1265 Pfam ABC transporter 379 525 IPR003439 GO:0005524
Vvi10g0398 1265 FunFam ABC transporter B family member 9 23 353 - -
Vvi10g0398 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1016 1253 IPR003439 GO:0005524
Vvi10g0398 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1007 1254 IPR027417 -
Vvi10g0398 1265 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524|GO:0016887
Vvi10g0398 1265 Gene3D - 356 625 IPR027417 -
Vvi10g0398 1265 FunFam ABC transporter B family member 1 1006 1256 - -
Vvi10g0398 1265 ProSitePatterns ABC transporters family signature. 1156 1170 IPR017871 GO:0005524|GO:0016887
Vvi10g0398 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 596 IPR027417 -
Vvi10g0398 1265 Gene3D ABC transporter type 1, transmembrane domain 97 990 IPR036640 GO:0005524|GO:0016020
Vvi10g0398 1265 Gene3D - 1006 1264 IPR027417 -
Vvi10g0398 1265 CDD ABC_MTABC3_MDL1_MDL2 1016 1252 - -
Vvi10g0398 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 684 999 - -
Vvi10g0398 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Vvi10g0398 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0398 1265 Gene3D ABC transporter type 1, transmembrane domain 12 96 IPR036640 GO:0005524|GO:0016020
Vvi10g0398 1265 MobiDBLite consensus disorder prediction 623 638 - -
Vvi10g0398 1265 MobiDBLite consensus disorder prediction 617 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0398 Vvi-Chr10 4537656 4542843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0398 1 1255 Calmodulin-binding Proteins AT2G36910 42.142 0.0 1000
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0398 K05658 - vvi:100265902 2341.61