Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0397 ATGAATAAAGATGGAGGAGAAACTACTGCCAAAAGACTCGATCAACAGAAGGTTACACTCTATAAACTCTTCTCATTTGCAGACCAAAGTGATGTGGTGTTGATGACTGTTGGGACCATAAGTGGCATGGCAAATGGGTGCTCCAGGCCGCTCATGACAGTCATGTTGGGCAAAACCATCAATAAATTTGGATCCACCGATCAATCCCAGATTCAAGTTGTGCATGTTGAATTGGGAGTCTTCCTTCTTGTGCTTTTGTACCTTGCGGTTGCATCTGGCATAGCGGGGTTTCTACAAACTTCAAGTTGGATGGTGACTGGAGCAAGACAGGCCAACCGCATCCGAAGTTTATACTTGGATACGATACTAAGACAGGACATTGGATTCTTTGACACTGAAACAACAACCGGAGAGGTCATTGGGAGGATGTCTGGGGATACTATTCTCATTCAAGATGCAATGGGTGAAAAGGTTGGGAAGTTCATACAACTCGTGTCAAATTTTATCGGTGCCTTCGTATTTGCCTTCATAATAGGATGGCGTCTCACCCTAGTCTTGCTTCCAACTGTTCCTCTTATTATCATTGCCGGAGCAGCCATGGCCGCCGTGATATCAAAAATGTCAAGTTATGGACAAGTTGCTTATGCGGAAGCTGGAAATGTAGTGGAACAAACAATAGGAGCGATCAGAACTGTGGCCGCCTTCACCGGAGAGAAGCATGCCATGGAAAAATATAATAGGAGGCTCAAAGTTGCTTACGCTGCTACTGTTAAGCAAGGGCTAGCCTCAGGCTTTGGAGTTGGAGTGGCTCTACTAATTGTCTTCCTCAGCTATGCACTTGCCATATGGTATGGGTCCAAATTGATCATTGAGAAAGGATACGATGGTGGAAAAATCGTGAATGTCCTGTTCTGTGTCATTGGTGGAGGAATGGCATTGGGCCAGGCATCCCCATGTCTGAGTGCTTTTGGAGCAGGGCAGGCTGCAGCATACAAGATGTTTGAGACGATCAAACGAAAACCAAAAATCAACGCCTATGATACTAATGGGGTTGTATTGGAAGAAATCATGGGAGAAATTGAACTCAAAGATGTCTACTTTAAATACCCTGCGAGGCCAGAAGTGCAGATATTTTCTGGTTTCTCATTAAACATTCCAAGTGGGACAACTGCGGCTTTAGTCGGGCAGAGTGGAAGTGGAAAGTCGACAGTGATCAGTCTGTTGGAAAGATTCTATGATCCCGAAGCTGGTGAAGTACTCATAGATGGTGTCAATCTAAAGAAAATAAATCTCAGATGGATCAGGGGGAAGATTGGGCTTGTCAGTCAGGAACCTATCTTGTTTGCAGCTACTATAAAGGAAAACATATCCTATGGAAAGGAAAAAGCAACTGACGAGGAGATTAGAACAGCAATTAAGCTTGCTAATGCTGCAAAATTCATTGACAAGATGCCCACGGGACTTGACACAATGGTGGGTGAGCATGGAACTCAGCTATCTGGGGGACAGAAGCAAAGAATTGCAATTGCAAGAGCCATTTTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACAAGTGCACTGGATGCTGAGTCTGAACGCATTGTCCAAGATGCACTACAGAACATCATGGTGAATCGAACCACTGTAATCGTGGCTCATCGGTTGACAACGATTAGGAATGCTGACAATATAGCAGTGGTGCATCAGGGGAAAATTGTGGAGCAAGGAACTCACATGGAGTTGATCAGAGATCCTGATGGGGCTTACTCCCAGCTAGTTCGCCTCCAAGAAGGACACAATCAGGTTGAAGATGCCCAATCAAGGGTAAATTCACCAAGTGTCCACCATTCTTATTCACTTAGCTCTGGCATTCCTGATCCAACTGGTATCATTGAAATGGAATTTGGTGGGAAGGAGAGCAGTACTACACAAGGTGAAGCAGAAAACAGGAAGAGACGCAAAGTTTCACTCATACGACTCGCCTACCTCAACAAGCCTGAAACGCCAGTTTTGCTACTTGGCTCCATTGCTGCAGGTTTCCATGGTATAATCTACCCAGTATTTGGCCTCCTGATCTCAACAGCCATTAAGATCTTCTATGAGCCTCCGAATGAGCTAAAAAAGGATTCCAGGGTTTGGGCATTCATGTTTATCGGTCTAGGTGTCCTGGCTTTTATAGCTCTTCCTTTGCAGAATTACTTATTCGGAATTGCAGGTGGAAAATTGATACAACGAATTTGTTCCTTATCTTTTGAGAAGGTTGTGCATCAGGAAATCAGTTGGTTTGATGACCCAGCAAATTCAAGTGGTTCAGTGGGTGCAAGGTTATCCACAGATGCTTCAACAGTCCGCAGTCTAGTGGGTGATACATTAGCCCTGGTTGTCCAGAACCTGGTGACAGTCGCAGCAGGACTTGTCATATCATTCACAGCTAACTGGATATTAGCACTAATAATATTAGCTGTGTTACCCTTAATGGGTTTTCAAGGATACCTACAAACAAGGTTCCTAAAGGGTTTCAGTGCAGACGCAAAGGTGATGTATGAAGAAGCAAGTCAAGTTGCAAATGATGCAGTTAGCAGCATCAGAACGGTTGCATCATTTTGTGCTGAGAAGAAGGTGATGGAGATGTATCAACAAAAATGTGAAGGCCCAATGAAGCATGGAGTTCGATTGGGACTTGTAAGTGGCGCAGGTTTAGGCTTTTCTTTCTTTTCAACCTACTGCACAAATGCCTTCTGTTTCTACATCGGAGCTGTTCTTGTGCAACATGGGAAAGCAACTTTCTCAGAAGTCTTCAAGGTTTACTTTGCTTTGACATTTTTGGCATTAGCGATTTCTGAAGCTACTGCCATGGCTCCAGACACCAACAAAGCCAAGGATTCAACTGCTTCTATCTTTGAACTTCTCGACAGCAAGCCCAAAATTGATTCAAGCAGCAATGAGGGCACGACCTTGTCGATTGTGAAGGGCGACATTGAGTTACAAAATGTCAGCTTTAGATATTCAACAAGGCCAGACGTTCAAATTTTCAGGGACTTGTGCTTGAGCATCCCCTCTGGAAAGACTGTTGCTCTAGTTGGAGAGAGTGGTAGTGGAAAGTCGACAGTAATCAGCCTACTAGAGAGATTCTACAATCCTGATTCCGGTCATATATTACTGGATGGAATGGAAATCCAAAAGTTCAAACTAAGCTGGCTGAGACAGCAAATGGGGTTGGTAAATCAAGAGCCTGCACTCTTCAATGAAACAATCCGCGCAAACATAGCATATGGAAAACAGGGAGAAGCTGCTGAGGAGGAGATCATTGCAGCCACAAGAGCAGCCAATGCCCACAACTTCATATCTGCATTACCCCAAGGCTATGACACCTCAGTTGGGGAACGGGGACTGCAATTGTCAGGCGGGCAGAAGCAGCGAATAGCCATTGCAAGGGCAATACTGAAGGACCCAAGGATCCTTCTTCTAGATGAGGCAACCAGTGCCCTCGATGCGGAGTCGGAGCGTGTGGTACAAGATGCCTTGGATAGAGTCATGGTTGACAGAACAACTGTGGTTGTGGCTCACCGCCTTACCACCATTAAAGGAGCTGATGTAATTGCAGTAGTGAAGAATGGTGAGATTGCAGAAAAGGGAACACATGACGTACTGATGGACATAAGGCATGGGGCCTATGCGTCTCTGGTAGCACTTCACATGGCTTCCTCAACTTGA 3720 0.4497 MNKDGGETTAKRLDQQKVTLYKLFSFADQSDVVLMTVGTISGMANGCSRPLMTVMLGKTINKFGSTDQSQIQVVHVELGVFLLVLLYLAVASGIAGFLQTSSWMVTGARQANRIRSLYLDTILRQDIGFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLVSNFIGAFVFAFIIGWRLTLVLLPTVPLIIIAGAAMAAVISKMSSYGQVAYAEAGNVVEQTIGAIRTVAAFTGEKHAMEKYNRRLKVAYAATVKQGLASGFGVGVALLIVFLSYALAIWYGSKLIIEKGYDGGKIVNVLFCVIGGGMALGQASPCLSAFGAGQAAAYKMFETIKRKPKINAYDTNGVVLEEIMGEIELKDVYFKYPARPEVQIFSGFSLNIPSGTTAALVGQSGSGKSTVISLLERFYDPEAGEVLIDGVNLKKINLRWIRGKIGLVSQEPILFAATIKENISYGKEKATDEEIRTAIKLANAAKFIDKMPTGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALQNIMVNRTTVIVAHRLTTIRNADNIAVVHQGKIVEQGTHMELIRDPDGAYSQLVRLQEGHNQVEDAQSRVNSPSVHHSYSLSSGIPDPTGIIEMEFGGKESSTTQGEAENRKRRKVSLIRLAYLNKPETPVLLLGSIAAGFHGIIYPVFGLLISTAIKIFYEPPNELKKDSRVWAFMFIGLGVLAFIALPLQNYLFGIAGGKLIQRICSLSFEKVVHQEISWFDDPANSSGSVGARLSTDASTVRSLVGDTLALVVQNLVTVAAGLVISFTANWILALIILAVLPLMGFQGYLQTRFLKGFSADAKVMYEEASQVANDAVSSIRTVASFCAEKKVMEMYQQKCEGPMKHGVRLGLVSGAGLGFSFFSTYCTNAFCFYIGAVLVQHGKATFSEVFKVYFALTFLALAISEATAMAPDTNKAKDSTASIFELLDSKPKIDSSSNEGTTLSIVKGDIELQNVSFRYSTRPDVQIFRDLCLSIPSGKTVALVGESGSGKSTVISLLERFYNPDSGHILLDGMEIQKFKLSWLRQQMGLVNQEPALFNETIRANIAYGKQGEAAEEEIIAATRAANAHNFISALPQGYDTSVGERGLQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQDALDRVMVDRTTVVVAHRLTTIKGADVIAVVKNGEIAEKGTHDVLMDIRHGAYASLVALHMASST* 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0397 1239 FunFam ABC transporter B family member 1 985 1235 - -
Vvi10g0397 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 985 1233 IPR027417 -
Vvi10g0397 1239 Pfam ABC transporter transmembrane region 36 307 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0397 1239 Pfam ABC transporter transmembrane region 674 944 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0397 1239 FunFam ABC transporter B family member 1 653 961 - -
Vvi10g0397 1239 MobiDBLite consensus disorder prediction 602 622 - -
Vvi10g0397 1239 Gene3D - 985 1234 IPR027417 -
Vvi10g0397 1239 Gene3D - 350 599 IPR027417 -
Vvi10g0397 1239 FunFam ABC transporter B family member 1 350 599 - -
Vvi10g0397 1239 CDD ABC_MTABC3_MDL1_MDL2 995 1231 - -
Vvi10g0397 1239 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524|GO:0016887
Vvi10g0397 1239 Pfam ABC transporter 380 527 IPR003439 GO:0005524
Vvi10g0397 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0397 1239 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 333 - -
Vvi10g0397 1239 Gene3D ABC transporter type 1, transmembrane domain 22 607 IPR036640 GO:0005524|GO:0016020
Vvi10g0397 1239 SUPERFAMILY ABC transporter transmembrane region 22 341 IPR036640 GO:0005524|GO:0016020
Vvi10g0397 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 674 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0397 1239 FunFam ABC transporter B family member 9 22 355 - -
Vvi10g0397 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 995 1232 IPR003439 GO:0005524
Vvi10g0397 1239 Gene3D ABC transporter type 1, transmembrane domain 963 984 IPR036640 GO:0005524|GO:0016020
Vvi10g0397 1239 Gene3D ABC transporter type 1, transmembrane domain 653 962 IPR036640 GO:0005524|GO:0016020
Vvi10g0397 1239 SUPERFAMILY ABC transporter transmembrane region 661 976 IPR036640 GO:0005524|GO:0016020
Vvi10g0397 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 598 IPR027417 -
Vvi10g0397 1239 PANTHER ABC TRANSPORTER B FAMILY 7 599 IPR039421 -
Vvi10g0397 1239 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Vvi10g0397 1239 ProSitePatterns ABC transporters family signature. 1135 1149 IPR017871 GO:0005524|GO:0016887
Vvi10g0397 1239 Pfam ABC transporter 1015 1163 IPR003439 GO:0005524
Vvi10g0397 1239 CDD ABC_6TM_Pgp_ABCB1_D2_like 663 978 - -
Vvi10g0397 1239 SMART AAA_5 387 573 IPR003593 GO:0016887
Vvi10g0397 1239 SMART AAA_5 1022 1209 IPR003593 GO:0016887
Vvi10g0397 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0397 Vvi-Chr10 4527597 4532706 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0397 1 1239 Calmodulin-binding Proteins AT2G36910 42.677 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0397 K05658 - vvi:100243576 2264.96