Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0396 ATGAAATTCATGGAGGGCTTTAGTGCTGATGCTAAGGTGATGTATGAAGAAGCAAGTCAAGTTGCAAGTGATGCAGTTGGCAGCATCAGAACTGTTGCATCATTTTGTGCAGAAAAGAAGGTGATGGATATGTACCGACAAAAATGCGAAGACACCTTGAACCATGGAGTTCGACAAGGAATTATAAGTGGTGCAGGTTTTGGCTTTTCTTTCATTGCATTTTACTGCACGAACGCCTTCTGTTTCTATATCGGAGCTGTGCTTGTGCAAAACGGGAGAGCAACTTTTGAACAAGTTTTCAAGGTGTTCTTCGCTTTGACAATTTCTGCAGTTGGGATTTCTAGTACCAGTTCCATGGGTCCAGACTCCAGACACCAACAAGGGCAGGGATGCAGCTGCTTCTATATTTGA 411 0.4331 MKFMEGFSADAKVMYEEASQVASDAVGSIRTVASFCAEKKVMDMYRQKCEDTLNHGVRQGIISGAGFGFSFIAFYCTNAFCFYIGAVLVQNGRATFEQVFKVFFALTISAVGISSTSSMGPDSRHQQGQGCSCFYI* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0396 136 Pfam ABC transporter transmembrane region 1 110 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0396 136 Gene3D ABC transporter type 1, transmembrane domain 1 124 IPR036640 GO:0005524|GO:0016020
Vvi10g0396 136 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 125 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0396 136 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 4 130 IPR039421 -
Vvi10g0396 136 SUPERFAMILY ABC transporter transmembrane region 1 122 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0396 Vvi-Chr10 4504715 4505281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0396 3 122 Calmodulin-binding Proteins AT2G36910 32.500 3.14e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0396 K05658 - vvi:100253815 197.978