Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0395 ATGAAAGAGGAAGGAGAAAAGGTGTCAAGCTGGATGATAATAGGAGAAAGACAGGCAACGTGCATTCGAGGCTTGTACTTGAAAACTATATTGAGACAGGATATTGCATTCTTTGACACTGAAACCACAACAGGAGAGGTCATTGGAAGGATGTCTGGGGACACCATTCTTATTCAAGACGCCATGGGCGAAAAGGTGGGAAAGTTTATAAAACTGATGTCAACTTTTGTTGGAGGCTTTGCAATTGCTTTTGCAAGAGGATGGCTTCTCTCCCTCGTTTTGCTTTCAAGTATTCCCCTTCTTGTCCTTAATGGCGGGGCCATGGCAATCTACATGGCGAAAATGTCGAGCCGTGGGCAACTTGCTTATGCAGAAGCTGGGAATGTGGTAGAACAAACAGTGGGAGCCATTAGAACGGTTGCATCTTTCACTGGGGAAAAGAAAGCAGTTGAAAAATACGAAAGTAAGCTGGAAGTGGACTATGCTTCTACTGTTCAACAAGGGCTAGCTTCAGGTGTAGGACTTGCTACAACATCTCCATGCTTGAATGCATTTGCAGCAGGACAAGCTGCAGCATATAAGATGTTTGAGACGATCAACCGAAAACCACCAATGGACCCCTATGATACGAGTGGGACTGTGTTGGCAGACATCAGGGGCGAAATTGAACTAAAAAATGTTTACTTCAAATACCCAGCAAGGCCAGACGTACAGATATTTTCGGGTTTCTCATTGTCTGTTCCAAGTGGGAAAACTGCTGCTTTGGTTGGGCAAAGTGGGAGTGGGAAATCAACAGTTATCAGTCTATTGGAGCGATTTTATGATCCTGATGCTGGTGAAGTACTTATTGATGGTGTTAATTTAAAGAAGTTTCGGCTTGGATGGATAAGAGAGAAGATAGGGTTAGTCAGTCAAGAACCTATCTTGTTTGGAGCTAGAATAAAGGAGAACATATCATATGGTAAGAAGGAAGCAACCGATGAAGAGATAAGAGAAGCAATCGAGCGTGCTAATGCTGCAAAATTCATTGACAAGCTGCCCTTGGGGATTGAAACAATGGTGGGTGAGCATGGAACTCAGCTCTCTGAAGGACAGAAGCAAAGAATTGCAATAGCAAGGGCCATTCTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACAAGTGCACTGGATGCGGAGTCTGAACGCATTGTCCAAGATGCACTACAAGACATCATGACAAATCGAACCACTGTCATCGTTGCCCATCGTTTGACAACCATCAGGAATGCAGATATCATAGCAGTGGTGTATCGCGGGAAACTAGTCGAGCAAGGAACTCATACAGAGCTGATCAAAGACCCTGATGGGGCTTACTCCCAGCTGGTTCGCCTCCAACAAGGAAACAATGAGGCTGAAGATCAAGCAACGGACACTGAAGAAGAAGCAGCAAAGAGTTTGAATATAGAGTATGGCATGAGCAGGTCCAGCGGATCGCGTAAACTGTCTCTACAGGATCTTGTAAGCGGTTCCTCAGCTAGCTGGCGTTCCCTCTCATTTCGCTACGGTCATCCACTTCCAAATGATGTGCATGACAAATTGATGCAGAAGAAGAGAGGAGAAAAAAGGTTTCAATTACACGGCTGGCCTACCTGA 1638 0.4487 MKEEGEKVSSWMIIGERQATCIRGLYLKTILRQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIKLMSTFVGGFAIAFARGWLLSLVLLSSIPLLVLNGGAMAIYMAKMSSRGQLAYAEAGNVVEQTVGAIRTVASFTGEKKAVEKYESKLEVDYASTVQQGLASGVGLATTSPCLNAFAAGQAAAYKMFETINRKPPMDPYDTSGTVLADIRGEIELKNVYFKYPARPDVQIFSGFSLSVPSGKTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKKFRLGWIREKIGLVSQEPILFGARIKENISYGKKEATDEEIREAIERANAAKFIDKLPLGIETMVGEHGTQLSEGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALQDIMTNRTTVIVAHRLTTIRNADIIAVVYRGKLVEQGTHTELIKDPDGAYSQLVRLQQGNNEAEDQATDTEEEAAKSLNIEYGMSRSSGSRKLSLQDLVSGSSASWRSLSFRYGHPLPNDVHDKLMQKKRGEKRFQLHGWPT* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0395 545 CDD ABC_6TM_Pgp_ABCB1_D1_like 8 178 - -
Vvi10g0395 545 Gene3D ABC transporter type 1, transmembrane domain 8 173 IPR036640 GO:0005524|GO:0016020
Vvi10g0395 545 PANTHER ABC TRANSPORTER B FAMILY 177 459 IPR039421 -
Vvi10g0395 545 Gene3D - 212 461 IPR027417 -
Vvi10g0395 545 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 11 178 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0395 545 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 222 458 IPR003439 GO:0005524
Vvi10g0395 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 460 IPR027417 -
Vvi10g0395 545 Pfam ABC transporter transmembrane region 9 178 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0395 545 Gene3D ABC transporter type 1, transmembrane domain 174 477 IPR036640 GO:0005524|GO:0016020
Vvi10g0395 545 Pfam ABC transporter 242 389 IPR003439 GO:0005524
Vvi10g0395 545 Coils Coil 456 483 - -
Vvi10g0395 545 CDD ABC_MTABC3_MDL1_MDL2 222 460 - -
Vvi10g0395 545 SMART AAA_5 249 435 IPR003593 GO:0016887
Vvi10g0395 545 FunFam ABC transporter B family member 1 212 461 - -
Vvi10g0395 545 SUPERFAMILY ABC transporter transmembrane region 11 203 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0395 Vvi-Chr10 4501595 4504153 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0395 7 497 Calmodulin-binding Proteins AT2G36910 45.719 2.99e-147 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0395 K05658 - vvi:100253815 733.021