Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0394 ATGGGAGAGGATGGAGAAGCTCAGGCCAAGGCGCCGGCGAGGGGGAGGAAGGCAGATGAAGAGAAGGTTCCCTTTTACAAGCTCTTCTCCTTTGCGGACAAACTAGACGTGGGGTTGATGATTGTAGGGACAGTGTGCGCCATGGCCAATGGCATGACGCAGCCCCTCATGACACTTATATTCGGTCAACTTATCAACACCTTCGGCGACTCTGATCCTTCCCATGTCGTCCATGAAGTCTCCAGGGTATCCTTAAAGTTTGTATACTTGGCTATTGGTTCGGGCATCGCTTCTCTCCTACAGGTGTCGAGCTGGATGGTAACAGGGGAAAGACAGGCAACGCGGATTCGAGGATTGTACTTGAAAACAATATTGAGACAGGACATAGCATTCTTTGACACTGAAACCACAACTGGAGAGGTCATTGGAAGGATGTCTGGAGACACGATTCTTATTCAAGATGCCATGGGTGAAAAGGTGGGGAAGTTCATACAACTAATGTCAACTTTTTTGGGCGGCTTCATAATTGCCTTTGCAAGAGGATGGCTTCTCTCCCTTGTTTTGCTTCCAAGCATTCCCCTTCTGGTGATTTCGGGTGGGACCATGGCGATTATCATGTCAAGAATGTCAAGCCGTGGGCAACTAGCTTATGCAGAAGCTGGAAATGTAGTAGAACAAACAGTTGGAGCAATTAGAACAGTTGCATCATTCACTGGGGAAAAGAAAGCGATCAAAAACTATGATAATAAGCTGCATATTGCGTATGCTTCCACTGTTCAACAAGGGCTGGCCTCAGGCATAGGGCTTGGTACAGTCCTACTAATTATCTTCGGTACATACGGTCTTGCCATGTGGTATGGATCCAAGCTGGTTATAGAGAGAGGATATGATGGTGGACGAGTCATCAATTGTATAATGGCCATCATGTCTGGAGGAATGTCGTTGGGCCAAACATCCCCATGCTTGAATGCATTTGCAGCAGGACAAGCTGCAGCATATAAGATGTTTGAGACTATCAAACGAAAACCACAAATTGATGCCTATGATACTAGTGGGACTGTGTTAGAAGATATTAGGGGTGAAATTGAACTCAAAGACGTGTATTTCAACTACCCAGCAAGGCCAGACGTCCAGATTTTTTCCGGTATTTCATTGCATGTTCCAAGTGGGAAAACTGCTGCTTTAGTTGGGCAAAGTGGAAGTGGGAAGTCAACAGTTATCAGTCTATTGGAGAGATTTTATGATCCCCATTCTGGTGAAGTACTCATTGATGGTGTTGATTTAAAGCAGTTGCAACTCAAGTGGATAAGGGAGAAGATTGGGCTAGTCAGTCAGGAACCTATCTTGTTTGCTACCACTATTAAGGAAAACATATCATATGGGAAAGAAGATGCTAGCGATGAGGAGATCAGGACAGCAATTGTGCTTGCTAATGCTGCAAAATTCATTGACAAACTGCCCAAGGGGCTAGACACAATGGTGGGTGAACATGGAACTCAGCTATCTGGGGGACAGAAGCAAAGAATTGCAATTGCAAGAGCCATTTTGAAGAACCCACGAATCCTTCTTCTTGATGAAGCAACAAGTGCACTAGATGCTGAGTCTGAACGCATCGTCCAAGATGCACTAGTAAATGTGATGGTAAATCGAACTACTGTAGTTGTTGCACATCGTTTGACAACTATCAGGAATGCAGATATCATAGCAGTGGTTTATCAGGGGAAAATCGTTGAGCAAGGAACTCATGGGGAGCTGATCAAGGACCCTGATGGAGCTTACACTCAGCTAGTTCACCTGCAAGAAGGAAACAGTCAAGCTAAGGATGCTCATATGGAGGACACTGATAAATTAGATAAGAGTCCTGATAATATGGACAATAGTATCGCCCGTTCTGGAAGCCAAAGATTGTCTTTATGGAGATCCATGAGCAGAGGTTCATCAAGCGGCAGGTCCTCTGTCTCACTTAGCTTTAGTGTTCCCTTCCCAATTGGTATTCCTGCGACTGAAATGGCTGGGCAGGATATTGAAAGACGTGACGGAGAAGATGAGAAGAGACGCAAAGTGTCATTGAGACGGCTGGCCTACCTGAACAAGCCTGAAGTGCCAGTTTTGCTACTTGGATCCATAGCTGCAGGAATACATGGTGTAATCTTCCCAATTTTTGGACTGTTACTCTCAACAGCCATTAAGATTTTCTTTGAGCCTCCTAATGAGCTAAAGAAAGATTCCAGGTTTTGGGCGCTTATGTTTGTGGGTCTGGGTGTCCTGACTCTGATGGTTGTTCCAGTACAGAACTACTTCTTTGGTGTTGCAGGTGGCAAATTGATACAACGAATTCGTTCCTTGTCCTTTGAGAAGGTTGTGCACCAAGAAATCAGTTGGTTTGATGACCCAGCAAATTCAAGTGGAGCAGTTGGTGCAAGGCTATCTACCGATGCTTCGAGTGTTCGCAGTCTGGTGGGTGATGCATTGGCCCTAGTAGTCCAGAACCTTACAACAGTCATAGCAGGCCTTGTCATATCATTCACAGCTAACTGGATATTGGCCTTAATAATTCTAGCTGTGTTGCCCTTGGTCTTCTTGCAAGGATATTTTCAGATGAAATTCGTGAAAGGGTTCAGCGCCGATGCCAAGGTGATGTATGAAGAAGCAAGTCAAGTTGCAAATGATGCAGTTGGCAGCATCAGAACTGTTGCATCATTTTGTGCGGAAAAGAAGGTGATGGATATGTATCAACAAAAATGTGACGCCCCTATGAAGCAAGGCGTTCGGCTAGGACTTGTTAGTGGTGCTGGTTTTGGCTTTTCTTTCTTTGCACTCTACTGCACAAATGCCTTCTGCTTCTATATTGGAGCTATTCTTGTGCAACATGGGAAAGCAACTTTTGGAGAAGTTTTCAAGGTTTTCTTTGCTTTGACGATTTCTGCCATTGGAATTTCCCAAACTAGTGCCATGGCTCCAGACACCAACAAAGCTAAAGATTCAACTGCTACAATATTTCAACTTCTTGACAGCAAGCCCACGATTGATTCGAGCAGCAATGAGGGCACAACCCTTGCTAATGTAAAGGGCGACATTGAGTTCCAGCATGTCAGCTTCAAATATTCAACAAGGCCAGATGTTCAAATTTTCAGAGACTTGTCCTTGAGCATCCCATCTGGAAAGACTGTTGCCCTAGTTGGAGAGAGTGGTAGTGGGAAGTCGACAGTAATCAGCCTAATAGAGAGGTTCTACAACCCTGAATCGGGTCGTATACTACTGGATGGAATGGAAATCCAGAAGTTGAAGCTTAGCTGGCTGAGGCAACAAATGGGGTTGGTAGGGCAAGAGCCTGTACTCTTCAATGAAACGATACGTGCCAACATAGCATATGGCAAAGAGGGAGCCACGGAAGATGAGATCATCGCAGCCACAAAAGCAGCAAATGCTCACAACTTCATACATTCATTGCCCCAAGGCTACGAGACTTCAGTTGGGGAACGAGGGGTGCAGCTGTCAGGTGGGCAGAAGCAGCGAATAGCCATTGCAAGGGCGATATTGAAGGACCCCAAGATCCTTCTCCTTGATGAGGCAACTAGTGCTCTAGACGCAGAGTCAGAACGTGTGGTACAGGAAGCATTAGATAGAGTGATGGTGGAGAGAACAACTGTAGTGGTAGCTCACCGCCTGACCACCATTAAAGGAGCAGATATAATTGCAGTGGTGAAGAACGGTGTGATCGCTGAAAAGGGTAGCCATGAGGAGCTGATGAGCATCACTGATGGGCCTTATGCATCTCTTGTAGCACTTCATACGACTTCCTCATCAACTTAA 3813 0.455 MGEDGEAQAKAPARGRKADEEKVPFYKLFSFADKLDVGLMIVGTVCAMANGMTQPLMTLIFGQLINTFGDSDPSHVVHEVSRVSLKFVYLAIGSGIASLLQVSSWMVTGERQATRIRGLYLKTILRQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLMSTFLGGFIIAFARGWLLSLVLLPSIPLLVISGGTMAIIMSRMSSRGQLAYAEAGNVVEQTVGAIRTVASFTGEKKAIKNYDNKLHIAYASTVQQGLASGIGLGTVLLIIFGTYGLAMWYGSKLVIERGYDGGRVINCIMAIMSGGMSLGQTSPCLNAFAAGQAAAYKMFETIKRKPQIDAYDTSGTVLEDIRGEIELKDVYFNYPARPDVQIFSGISLHVPSGKTAALVGQSGSGKSTVISLLERFYDPHSGEVLIDGVDLKQLQLKWIREKIGLVSQEPILFATTIKENISYGKEDASDEEIRTAIVLANAAKFIDKLPKGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALVNVMVNRTTVVVAHRLTTIRNADIIAVVYQGKIVEQGTHGELIKDPDGAYTQLVHLQEGNSQAKDAHMEDTDKLDKSPDNMDNSIARSGSQRLSLWRSMSRGSSSGRSSVSLSFSVPFPIGIPATEMAGQDIERRDGEDEKRRKVSLRRLAYLNKPEVPVLLLGSIAAGIHGVIFPIFGLLLSTAIKIFFEPPNELKKDSRFWALMFVGLGVLTLMVVPVQNYFFGVAGGKLIQRIRSLSFEKVVHQEISWFDDPANSSGAVGARLSTDASSVRSLVGDALALVVQNLTTVIAGLVISFTANWILALIILAVLPLVFLQGYFQMKFVKGFSADAKVMYEEASQVANDAVGSIRTVASFCAEKKVMDMYQQKCDAPMKQGVRLGLVSGAGFGFSFFALYCTNAFCFYIGAILVQHGKATFGEVFKVFFALTISAIGISQTSAMAPDTNKAKDSTATIFQLLDSKPTIDSSSNEGTTLANVKGDIEFQHVSFKYSTRPDVQIFRDLSLSIPSGKTVALVGESGSGKSTVISLIERFYNPESGRILLDGMEIQKLKLSWLRQQMGLVGQEPVLFNETIRANIAYGKEGATEDEIIAATKAANAHNFIHSLPQGYETSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQEALDRVMVERTTVVVAHRLTTIKGADIIAVVKNGVIAEKGSHEELMSITDGPYASLVALHTTSSST* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0394 1270 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 323 - -
Vvi10g0394 1270 Pfam ABC transporter 381 529 IPR003439 GO:0005524
Vvi10g0394 1270 ProSitePatterns ABC transporters family signature. 1165 1179 IPR017871 GO:0005524|GO:0016887
Vvi10g0394 1270 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 1009 - -
Vvi10g0394 1270 Gene3D - 1016 1269 IPR027417 -
Vvi10g0394 1270 MobiDBLite consensus disorder prediction 602 627 - -
Vvi10g0394 1270 SMART AAA_5 389 575 IPR003593 GO:0016887
Vvi10g0394 1270 SMART AAA_5 1053 1245 IPR003593 GO:0016887
Vvi10g0394 1270 SUPERFAMILY ABC transporter transmembrane region 691 1007 IPR036640 GO:0005524|GO:0016020
Vvi10g0394 1270 Gene3D ABC transporter type 1, transmembrane domain 85 1000 IPR036640 GO:0005524|GO:0016020
Vvi10g0394 1270 CDD ABC_MTABC3_MDL1_MDL2 1026 1261 - -
Vvi10g0394 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 600 IPR027417 -
Vvi10g0394 1270 FunFam ABC transporter B family member 1 1016 1265 - -
Vvi10g0394 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 991 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0394 1270 Gene3D - 360 627 IPR027417 -
Vvi10g0394 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0394 1270 FunFam ABC transporter B family member 1 352 601 - -
Vvi10g0394 1270 FunFam ABC transporter B family member 9 27 357 - -
Vvi10g0394 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1026 1262 IPR003439 GO:0005524
Vvi10g0394 1270 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Vvi10g0394 1270 SUPERFAMILY ABC transporter transmembrane region 27 346 IPR036640 GO:0005524|GO:0016020
Vvi10g0394 1270 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Vvi10g0394 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1262 IPR027417 -
Vvi10g0394 1270 MobiDBLite consensus disorder prediction 605 623 - -
Vvi10g0394 1270 FunFam Os01g0533900 protein 684 992 - -
Vvi10g0394 1270 PANTHER ABC TRANSPORTER B FAMILY 11 601 IPR039421 -
Vvi10g0394 1270 Pfam ABC transporter transmembrane region 705 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0394 1270 Pfam ABC transporter transmembrane region 40 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi10g0394 1270 Pfam ABC transporter 1045 1193 IPR003439 GO:0005524
Vvi10g0394 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0394 Vvi-Chr10 4494170 4500488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0394 1 1264 Calmodulin-binding Proteins AT2G36910 44.836 0.0 1076