Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0360 ATGGACTTGGTGGAGGAAAAGTACAAGGGTAATATGTCGGATGCTGTTGAGGAGATGCAAGAAAGGGAGAATCCTGGGAATAAGTGGGATGAAAGTAGTTTGGTGAAATTCAGTAAGTCGTTGGGGTTCTCAACTAAAGGCGTTGAAGGGGAAATCCTAAAATTGCTGCTAAGATTGAAAACCAGAAGAGATCAAGGCAAGAAAAAGGGAACTCTAGGACTGACTAGGTTTGATCGGGAAGTAAAAAAGTTAGAATGTTCGATTAATTACGATGGAGAGAGCAGAAAGAAAGGGGTGAGGAAGGAAAATCTTGCACGTGCTATTGAGCATGAGTCGAATGGAAATTCTGCTGCAGCTTATGAGTGCTATCAAAAGGCAGTTGACATCTCACCTTCAATTGCACGTGAACTAATTCAGGTCTTAAAGCAGGAGAATGTATCCTATATTGTGGCTCCTTATGAGGCAGATGCCCAAATGACCTTCTTGGCAGTCAGCCAACAGGTTGATGCAATTATCACTGAGGACTCCGATATGATACCATTTGGTTGTCCAAGGATTATCTTTAAAATGGACAAGTTTGGGCAAGGTGTTGAGTTTAAGTATTCTATGATACAACAGAACAAGGAGCTGAGTTTTGCAGGATTTACTAAGCAAATGATTCTTGAAATGTGCATTTTGAGTGGTTGTGACTATTTGCAGTCTCTTCCAGGAATGGGCCTGAAAAAGGCACATGCACTTATTAAGAAGTTCAAAAGTTATGACAAGGTGATTAAGCACTTGAGGTATGCTACAGGTTCAGTTCCACCCCTCTATGAAGAATCTTTCAAGAAAGCAATGTTGACTTTTCAGCATCAACGAGTTTATGATCCCACAATTGAAGATATTGTACATTTGTCTGTCCTATCTGACAATGTTGATCGTATCTTAACCATTATTACATTGATATCACAAGATATAGCTAAAGGTATAGCAACAGGAGATCTTGATCCATTCACAAAAATGCCATTTCAGGGGCAGAATGCCAGTGATGGGTTGCTGCTTGATGGAACGTATCAACTCGAGAGCTTTAAACCTGAAAGTGAAAGGAAAAAGATAGAATTACCTGCTCAGAAGAATCTTCTGACTAACTATTTCTGCTTTACATCTCTTGAAGCAAAAGGAAAATTCAGGGCTCCTCGAATCACACCAAATGATTCTAATCCAGTTCATGGATTTCCTCCTACAACCTGCTTGTCAGCATCTGTACTCAAATCAGGAAATCTGGGCAATGCCACTCCTTCTAATGACTCTGATGTGAAAGCCAAGTACATGCGGACAAATGCATCTCTTGCCAATAGAAGTAATTGTGATCCTGACATAGATGATACATTTATTGAGACAGAAGGAGGAGGAAAATTTGGATCTAACATTTCGCATTTGGGTCATTATTCTGATATAGCAGAGAAATCAATGGAAAGATTTGTTTCAGTATTATCATCATTCAATTACTCGTCTGGTTCTCGTGCCAGTGGTCTCCGTGCTCCTCTGAGAGATGTGCAGAACATTCATCCTACTAGGTCAACTGTTGGCATTGATGTAAACAAATTTGCTTATGTACCAAATAAGATGAGGACTGCCTCAGCATCTCAAAAGAGGCTGAATATGAATAATATTTAA 1656 0.3973 MDLVEEKYKGNMSDAVEEMQERENPGNKWDESSLVKFSKSLGFSTKGVEGEILKLLLRLKTRRDQGKKKGTLGLTRFDREVKKLECSINYDGESRKKGVRKENLARAIEHESNGNSAAAYECYQKAVDISPSIARELIQVLKQENVSYIVAPYEADAQMTFLAVSQQVDAIITEDSDMIPFGCPRIIFKMDKFGQGVEFKYSMIQQNKELSFAGFTKQMILEMCILSGCDYLQSLPGMGLKKAHALIKKFKSYDKVIKHLRYATGSVPPLYEESFKKAMLTFQHQRVYDPTIEDIVHLSVLSDNVDRILTIITLISQDIAKGIATGDLDPFTKMPFQGQNASDGLLLDGTYQLESFKPESERKKIELPAQKNLLTNYFCFTSLEAKGKFRAPRITPNDSNPVHGFPPTTCLSASVLKSGNLGNATPSNDSDVKAKYMRTNASLANRSNCDPDIDDTFIETEGGGKFGSNISHLGHYSDIAEKSMERFVSVLSSFNYSSGSRASGLRAPLRDVQNIHPTRSTVGIDVNKFAYVPNKMRTASASQKRLNMNNI* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0360 551 CDD H3TH_EXO1 218 289 IPR037315 GO:0003677|GO:0035312
Vvi10g0360 551 SMART HhH_4 217 250 IPR008918 GO:0003677|GO:0003824
Vvi10g0360 551 FunFam - 77 211 - -
Vvi10g0360 551 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 215 337 IPR036279 -
Vvi10g0360 551 FunFam exonuclease 1 213 285 - -
Vvi10g0360 551 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 162 182 IPR006084 -
Vvi10g0360 551 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 220 235 IPR006084 -
Vvi10g0360 551 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 141 158 IPR006084 -
Vvi10g0360 551 Pfam XPG I-region 145 230 IPR006086 GO:0004518
Vvi10g0360 551 SUPERFAMILY PIN domain-like 93 230 IPR029060 -
Vvi10g0360 551 Gene3D - 77 211 - -
Vvi10g0360 551 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 95 400 IPR006084 -
Vvi10g0360 551 SMART xpgineu 142 212 IPR006086 GO:0004518
Vvi10g0360 551 Gene3D - 214 285 - -
Vvi10g0360 551 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0360 Vvi-Chr10 3937807 3949493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0360 77 333 Core DNA Replication Machinery Family AT5G26680 27.431 8.52e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0360 K10746 - vvi:100245156 645.195