Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0357 ATGATGGTGATTACAAAGTTCTTTGCTTTGAAAGTAAACTATTATTTAAGAAACCAAAAGCTCACAAGCCAGGTTCATGAAATTGTTGGTCGTATCAATGGGCGATTTGGAACTCTCACTACCGTTCCAATACATCATTTGGATCGATCTCTTGACTTCCATGCATTATGTGCACTTTATGCTGTCACTGATGTAGCACTTGTTACATCTTTAAGGGATGGAATGAATCTTGTTAGCTATGAGTTTGTGGCCTGCCAAGCTTCAAAGAAAGGGGTTCTCATTCTAAGTGAGTTTGCAGGTGCTGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAACCCATGGAATATCACAGAAGTTGCTGCTTCAATTGGCTATGCCTTGAATATGCCAGCTGACGAAAGAGAAAAAAGACACTGGCATAATTTCATGCATGTGACTACTCACACATCTCAAGAATGGGCATTGACCTTTGTAAGTGAACTCAATGATACCATTTTTGAAGCTCAGCTGAGGACAAGACAAGTTCCACCTTTACTTCCAACAAAAGATGCAATTGAACGATATCTGCAATCCAATAATCGATTGCTTATACTGGGCTTCAATTCTACATTAACCGAACCAGTAGACATCCCAGGTAGAAGAGGTGGGCAAATTAAAGAAATGGAGCTTAAATTGCACCCAGATTTGAAAGAACCCTTGAAGAAGCTTTGTGATGATCCGAAGACAACGGTTATTATTCTCAGTGGAAGCGACAGGGGGGTCCTGGACGATAATTTCAGTGAATACAACATGTGGTTGGCAGCTGAAAATGGGATGTTTTTACGTCTTACCACAGGAGAATGGATGACGACAATGCCAGATAATCTGAATATGGATTGGGTTGACAGTGTAAAGCATGTTTTTGAGTATTTTACTGAAAGAACACCTCGATCTCATTTTGAGCTTCGTGAGACTTCACTTGTGTGGAATTACAAGTATGCAGACATTGAATTTGGGAGGCTTCAAGCAAGAGATATGTTGCAGCATCTGTGGACAGGCCCAATCTCTAATGCGTCTGTTGATGTTGTGCAAGGTGGCCGATCTGTTGAAGTCCGAGCAGTGGGTGTTACAAAGGGTGCAGCTATTGATCGTATTTTAGGAGAAATAGTTCATAACAGGGGCATGAAGGCACCTATTGATTATGTCCTGTGCATTGGGCACTTTTTGGGGAAGGATGAAGACATCTATACATTTTTTGAGCCAGAACTTCCTTCTGAACCGGCAGCTGCAGCAAGAACCAAGGTAGTTGAACCTGTCAAAACATCTGCAACTAAGGTTTCAACCAGTAAAAGTGGGTCCAAGCCATCTCGCTGTAAGAAACAACAGGCCTCATCAACCTTAGAGAAAACATGCAATTATGGGAGTGGAAGCGGGAGTGGTTGGCGGCCTACAATGCATCAAAAACCGTCACTGCACGAGGGTTCATCAGTTCTTGATCTCAAGGGTGACAATTACTTCTCCTGTGCTGTTGGACGGAAGCGATCAAAAGCCAGATATCTCCTTGGCTCATTAGATGATGTTGTTACGTTAATAAAGGATTTGGCAGAATTTTCAAGACCATGTTGA 1608 0.4229 MMVITKFFALKVNYYLRNQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMPADEREKRHWHNFMHVTTHTSQEWALTFVSELNDTIFEAQLRTRQVPPLLPTKDAIERYLQSNNRLLILGFNSTLTEPVDIPGRRGGQIKEMELKLHPDLKEPLKKLCDDPKTTVIILSGSDRGVLDDNFSEYNMWLAAENGMFLRLTTGEWMTTMPDNLNMDWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADIEFGRLQARDMLQHLWTGPISNASVDVVQGGRSVEVRAVGVTKGAAIDRILGEIVHNRGMKAPIDYVLCIGHFLGKDEDIYTFFEPELPSEPAAAARTKVVEPVKTSATKVSTSKSGSKPSRCKKQQASSTLEKTCNYGSGSGSGWRPTMHQKPSLHEGSSVLDLKGDNYFSCAVGRKRSKARYLLGSLDDVVTLIKDLAEFSRPC* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0357 535 Pfam Glycosyltransferase family 20 18 163 IPR001830 GO:0003824|GO:0005992
Vvi10g0357 535 Pfam Trehalose-phosphatase 210 430 IPR003337 GO:0003824|GO:0005992
Vvi10g0357 535 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 18 530 IPR001830 GO:0003824|GO:0005992
Vvi10g0357 535 MobiDBLite consensus disorder prediction 435 455 - -
Vvi10g0357 535 SUPERFAMILY HAD-like 195 384 IPR036412 -
Vvi10g0357 535 FunFam Alpha,alpha-trehalose-phosphate synthase 222 293 - -
Vvi10g0357 535 CDD HAD_TPP 196 433 - -
Vvi10g0357 535 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 19 165 - -
Vvi10g0357 535 Gene3D Glycogen Phosphorylase B; 10 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0357 Vvi-Chr10 3883840 3911610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0357 19 530 Trehalose Biosynthesis Gene Families AT1G78580 73.282 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0357 K16055 - vvi:100255459 1018.45